Gene detail

Detailed information of evm.model.Ap1.18 in Astrangia poculata

Genomic Location: Ap1:174755...187387
NR annotation: KAJ7388784.1, Gamma-tubulin complex component 4 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.18

atgttacacgaacttctgttggcgttatctggagattctggcggagtgtttgtacataaaaagtttgctggacttcaggttgctgctgacttgccatttatccatggaagtgaggttgatcttctgaatagaatttgcaagcttgggtcttacttccaaaagtttcagatattttgtagaaaatattcacaagtttctccctttataagagaaaactccaatgatggaacgacactggcacaggaaccatttggtttgtacatccaggcattctgtactggattagatcaagttcttgattcctacaggaaaagcttgattgatttagaaaaacagattcttgaagatcccaatctgcctcttacttacattgaacacagcttggaacagtatcaagttttatttcctgccatttggtcagttattgaacagatccaagctagcaaggccttgggatgtcaaatcctggatatattgcaccaaagttgtaactgcggtattcctgatgtgagagatgcattagagagaatcctgtttgtgtgtcatggtgtgatgtatcaacaactcagtgcctgggtccttcacgggattcacattgataaacacaatgagttcttcattaaggaagtcacttcagctgacgatcaaacagttaccaaaacagatgaaggtgccacaagtagcggcagtgaccttggaatacctgggattacaggaagacaacttgctgaaatactggaaggtgaggcgaagaagcagttgcctgctcgatggcagtttagaataaatgcagaaatgctgccatcctacattcctacaagagtagctgataaggttttgttcattggtgaatctgttggaatgtttaaaggatcaaagaaaactaaaaattctctttatagaagttctgttattcaggacaaagaacaagagtttaccaggtcattatattcactgcaacagctgcccaagtttaatttgatgttgtttgaaaatgaaattgacaagatcaggttgtgtgttgctgagcatctctggaaacttgttgttgaggatgtgaacctactgaaacatttacagattttgaaagattttttcttgttgggaagaggagaactattttcagcatttatagaacatgccagaggtttacttaaactgcctccatcagacaacacatctcatgatgccaatgcagcatttctacaagttcttagcaagtttcttcctgatgacgacgaagctgcttctatgttcactgttgtgattgacaaagaaattactcagcacgagaaaaagaagaaaacaaatacagcagaccagtcatctgctttggtatctggttgggattgtgttaaacttcagtatgatgtccaatggccattacacattctgttccagccggctgtcctagaaaagtataacaacctgtttagatttttgttaaaagtgaagcggacacagctggatcttcaacaagtctgggcagcctacatgggtactaaacacttatctactgcacagctatcaaatatgacaaagatctggctttcaaggatgcatatggctttcctggtggataatttgcagtattacctccaggttgatgtgctagaagcgcagtacagtcagttgttggagaagataaatagtacacgtgactttgaatcaatccgcttggcacatgatcactttattaccacactgatggcccagtcattcttactcatgaaaccggtgtcacactgccttgatgaaatcctgaacttgtgtcaatcattcagctcgcttctacttcaaacaggcagtaccagcctgacacaaagagaactgacacagattgagaacattactaagacgtatgaaagacagacaatccttttgtttcaaatcttgtcaagtgttcggagtcatcaagccagccctcatcttgctcaactgctgcttagaattgactttaataaacatttctcgtcatcttcatcatcaggaccagcaataagttcgtcagaaacctctggttaa

Transcript

evm.model.Ap1.18

ATGTTACACGAACTTCTGTTGGCGTTATCTGGAGATTCTGGCGGAGTGTTTGTACATAAAAAGTTTGCTGGACTTCAGGTTGCTGCTGACTTGCCATTTATCCATGGAAGTGAGGTTGATCTTCTGAATAGAATTTGCAAGCTTGGGTCTTACTTCCAAAAGTTTCAGATATTTTGTAGAAAATATTCACAAGTTTCTCCCTTTATAAGAGAAAACTCCAATGATGGAACGACACTGGCACAGGAACCATTTGGTTTGTACATCCAGGCATTCTGTACTGGATTAGATCAAGTTCTTGATTCCTACAGGAAAAGCTTGATTGATTTAGAAAAACAGATTCTTGAAGATCCCAATCTGCCTCTTACTTACATTGAACACAGCTTGGAACAGTATCAAGTTTTATTTCCTGCCATTTGGTCAGTTATTGAACAGATCCAAGCTAGCAAGGCCTTGGGATGTCAAATCCTGGATATATTGCACCAAAGTTGTAACTGCGGTATTCCTGATGTGAGAGATGCATTAGAGAGAATCCTGTTTGTGTGTCATGGTGTGATGTATCAACAACTCAGTGCCTGGGTCCTTCACGGGATTCACATTGATAAACACAATGAGTTCTTCATTAAGGAAGTCACTTCAGCTGACGATCAAACAGTTACCAAAACAGATGAAGGTGCCACAAGTAGCGGCAGTGACCTTGGAATACCTGGGATTACAGGAAGACAACTTGCTGAAATACTGGAAGGTGAGGCGAAGAAGCAGTTGCCTGCTCGATGGCAGTTTAGAATAAATGCAGAAATGCTGCCATCCTACATTCCTACAAGAGTAGCTGATAAGGTTTTGTTCATTGGTGAATCTGTTGGAATGTTTAAAGGATCAAAGAAAACTAAAAATTCTCTTTATAGAAGTTCTGTTATTCAGGACAAAGAACAAGAGTTTACCAGGTCATTATATTCACTGCAACAGCTGCCCAAGTTTAATTTGATGTTGTTTGAAAATGAAATTGACAAGATCAGGTTGTGTGTTGCTGAGCATCTCTGGAAACTTGTTGTTGAGGATGTGAACCTACTGAAACATTTACAGATTTTGAAAGATTTTTTCTTGTTGGGAAGAGGAGAACTATTTTCAGCATTTATAGAACATGCCAGAGGTTTACTTAAACTGCCTCCATCAGACAACACATCTCATGATGCCAATGCAGCATTTCTACAAGTTCTTAGCAAGTTTCTTCCTGATGACGACGAAGCTGCTTCTATGTTCACTGTTGTGATTGACAAAGAAATTACTCAGCACGAGAAAAAGAAGAAAACAAATACAGCAGACCAGTCATCTGCTTTGGTATCTGGTTGGGATTGTGTTAAACTTCAGTATGATGTCCAATGGCCATTACACATTCTGTTCCAGCCGGCTGTCCTAGAAAAGTATAACAACCTGTTTAGATTTTTGTTAAAAGTGAAGCGGACACAGCTGGATCTTCAACAAGTCTGGGCAGCCTACATGGGTACTAAACACTTATCTACTGCACAGCTATCAAATATGACAAAGATCTGGCTTTCAAGGATGCATATGGCTTTCCTGGTGGATAATTTGCAGTATTACCTCCAGGTTGATGTGCTAGAAGCGCAGTACAGTCAGTTGTTGGAGAAGATAAATAGTACACGTGACTTTGAATCAATCCGCTTGGCACATGATCACTTTATTACCACACTGATGGCCCAGTCATTCTTACTCATGAAACCGGTGTCACACTGCCTTGATGAAATCCTGAACTTGTGTCAATCATTCAGCTCGCTTCTACTTCAAACAGGCAGTACCAGCCTGACACAAAGAGAACTGACACAGATTGAGAACATTACTAAGACGTATGAAAGACAGACAATCCTTTTGTTTCAAATCTTGTCAAGTGTTCGGAGTCATCAAGCCAGCCCTCATCTTGCTCAACTGCTGCTTAGAATTGACTTTAATAAACATTTCTCGTCATCTTCATCATCAGGACCAGCAATAAGTTCGTCAGAAACCTCTGGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UGJ1	Gamma-tubulin complex component 4 OS=Homo sapiens OX=9606 GN=TUBGCP4 PE=1 SV=1
Q9D4F8	Gamma-tubulin complex component 4 OS=Mus musculus OX=10090 GN=Tubgcp4 PE=1 SV=2
Q9M350	Gamma-tubulin complex component 4 OS=Arabidopsis thaliana OX=3702 GN=GCP4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04130 all species →	GCP_C_terminal	Gamma tubulin complex component C-terminal	Domain	Interproscan
PF17681 all species →	GCP_N_terminal	Gamma tubulin complex component N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007259 all species →	Family	Gamma-tubulin complex component protein	Interproscan
IPR040457 all species →	Domain	Gamma tubulin complex component, C-terminal	Interproscan
IPR042241 all species →	Homologous_superfamily	Gamma-tubulin complex component, C-terminal domain superfamily	Interproscan
IPR041470 all species →	Domain	Gamma tubulin complex component protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19302 all species →	GAMMA TUBULIN COMPLEX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0000923 all species →	Cellular Component	equatorial microtubule organizing center	Interproscan
GO:0000930 all species →	Cellular Component	gamma-tubulin complex	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan
GO:0051011 all species →	Molecular Function	microtubule minus-end binding	Interproscan
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0051321 all species →	Biological Process	meiotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16571	TUBGCP4, GCP4; gamma-tubulin complex component 4	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.