Gene detail

Detailed information of evm.model.Ap1.1828 in Astrangia poculata

Genomic Location: Ap1:18990083...19019743
NR annotation: XP_020628913.1, translation elongation factor 2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.1828

ccgaactttacgatagaacagatccgtgggatcatggacaagaagcacaatatcagaaacatgtctgttattgctcatgttgatcatggaaagtccacactgacagattctttggtcagcaaagctggaattattgcatccgctaaagctggtgaagcaaggtttacagacaccaggaaggacgaacaagaacgttgcattaccatcaaatcaacagctatctctatgtactatgaactgtcagatgaggatttgacctatatagagggtgaaagagacggcaagggcttcttgattaatctgattgattcaccaggacacgtagatttctcatcagaggttacagctgctctacgtgtaaccgatggtgcccttgttgttgtagactgtgttagtggtgtttgtgtccagactgagacagtactgcgacaagctatcaatgagcgtatcaagcctgttctgtttatgaacaaaatggatcgtgcacttctagaacttcagttggagaaagaagatctttaccaaacccttcagcgtattgtggagagcaccaatgttattgtggcaacatacgctgacgatgatggtccaatgggaaatatacaggtttctccagagaaaggaactgtgggatttggttcagggctccatggctgggctttcacccttaagcagtttgcagaaatttacagcaaaaagttcaagattgaacctgcaaagcttatgaaacgtctttggggagaccagttctacaatgcctcaactaagaagtggaacaagcaggagggagatggttatgttcgtgggtttaaccagtttgttttggacccaatttacaagatgtttgacgcaatcatgaatttcaagaaagaggaaactgcaaaactgcacgaaaagctcaatatcaaactcacctcagaggaaaaagacatggaaggcaaaccactgttgaagaggaccatgcagaagtggctgccagctggcgatgccctgcttcagatgatcaccatccacttgccatcccctgtcagggctcagaggtaccgtatggagttgctttacgagggacctcaggatgatcccgttgccattggaatcaaaaactgtgatccccaggctccactgtgtttgtatgtgtccaagatggttccaactgtagacaaaggtcgtttctatgccttcggccgtgtattttcgggaaaagttgcaacaggacagaaagtgcgcatcatgggcccaaattatgtaccaggaaagaaggaagatttatataacaagagcattcagaggacaattttgatgatgggccgctacattgaagccattgaggatgttccttgtggcaacattgtgggacttgttggagtggatcagtttttggtcaagactggtactattacaacctatgaaaatgcccacaacttaaagatgatgaagttctcagtgtcaccagtggttcgtgtagcagttgaggcaaagaacccatctgaattgccaaagctggtggaaggtcttaagcgactggccaagtctgatcctatggtgcagtgtacaattgaggagagtggggaacacattgtggcaggagccggagaactgcatttggaaatctgtctgaaggatttagaagaagaccatgcttgtattcctctcaagaaatcagatccagtggtatcataccgtgaaacagtatctgagacatcctcccaaacatgtctttcaaagtcgccaaacaagcataaccgtctgttcatgacagcgactcctttccctgaaggtcttgctgaagatatagacaaaggagacgtgagttccaggcaagattttaaagctcgtggccgctacttggctgaaaagtatgaatacgatccaacagaggcacgtaagatttggtgctttggacccgagggaactggtcccaacttggtgattgactgtacaaagggagtacaatatctgaatgaaatcaaggatagtgtggtagcaggattccaatgggcgatgaaagaaggtgttctctgtgacgaaaatgtgcgtggtgtgaggttcaacatccacgatgtcactcttcatgctgatgcaattcaccgtggtggtggacagattattccaactgctcgtcgctgtttcttagcctgcatgctgactgctgcgcccaccatcatggagccagtttatttgtgcgaaattcagtgtcctgaggctgcagttggaggaatttatggagtgctgaacaggagacgagggcatgtttttgaagagagccaagtggctggaactcccatgtttgttgttaaggcatacctgcctgttaatgagtcatttggtttcactgcagaccttcgctccaacactggtggccaggccttccctcagtgtgtgtttgaccactggcagacaatgcaaggtgatgccacagacgccacgacaaagcctggtactgtagtgtttaccacaaggaagaggaagggtctatcggaggaactgccacctttggataggttcttggataaactgtaa

Transcript

evm.model.Ap1.1828

GCCGAACTTTACGATAGAACAGATCCGTGGGATCATGGACAAGAAGCACAATATCAGAAACATGTCTGTTATTGCTCATGTTGATCATGGAAAGTCCACACTGACAGATTCTTTGGTCAGCAAAGCTGGAATTATTGCATCCGCTAAAGCTGGTGAAGCAAGGTTTACAGACACCAGGAAGGACGAACAAGAACGTTGCATTACCATCAAATCAACAGCTATCTCTATGTACTATGAACTGTCAGATGAGGATTTGACCTATATAGAGGGTGAAAGAGACGGCAAGGGCTTCTTGATTAATCTGATTGATTCACCAGGACACGTAGATTTCTCATCAGAGGTTACAGCTGCTCTACGTGTAACCGATGGTGCCCTTGTTGTTGTAGACTGTGTTAGTGGTGTTTGTGTCCAGACTGAGACAGTACTGCGACAAGCTATCAATGAGCGTATCAAGCCTGTTCTGTTTATGAACAAAATGGATCGTGCACTTCTAGAACTTCAGTTGGAGAAAGAAGATCTTTACCAAACCCTTCAGCGTATTGTGGAGAGCACCAATGTTATTGTGGCAACATACGCTGACGATGATGGTCCAATGGGAAATATACAGGTTTCTCCAGAGAAAGGAACTGTGGGATTTGGTTCAGGGCTCCATGGCTGGGCTTTCACCCTTAAGCAGTTTGCAGAAATTTACAGCAAAAAGTTCAAGATTGAACCTGCAAAGCTTATGAAACGTCTTTGGGGAGACCAGTTCTACAATGCCTCAACTAAGAAGTGGAACAAGCAGGAGGGAGATGGTTATGTTCGTGGGTTTAACCAGTTTGTTTTGGACCCAATTTACAAGATGTTTGACGCAATCATGAATTTCAAGAAAGAGGAAACTGCAAAACTGCACGAAAAGCTCAATATCAAACTCACCTCAGAGGAAAAAGACATGGAAGGCAAACCACTGTTGAAGAGGACCATGCAGAAGTGGCTGCCAGCTGGCGATGCCCTGCTTCAGATGATCACCATCCACTTGCCATCCCCTGTCAGGGCTCAGAGGTACCGTATGGAGTTGCTTTACGAGGGACCTCAGGATGATCCCGTTGCCATTGGAATCAAAAACTGTGATCCCCAGGCTCCACTGTGTTTGTATGTGTCCAAGATGGTTCCAACTGTAGACAAAGGTCGTTTCTATGCCTTCGGCCGTGTATTTTCGGGAAAAGTTGCAACAGGACAGAAAGTGCGCATCATGGGCCCAAATTATGTACCAGGAAAGAAGGAAGATTTATATAACAAGAGCATTCAGAGGACAATTTTGATGATGGGCCGCTACATTGAAGCCATTGAGGATGTTCCTTGTGGCAACATTGTGGGACTTGTTGGAGTGGATCAGTTTTTGGTCAAGACTGGTACTATTACAACCTATGAAAATGCCCACAACTTAAAGATGATGAAGTTCTCAGTGTCACCAGTGGTTCGTGTAGCAGTTGAGGCAAAGAACCCATCTGAATTGCCAAAGCTGGTGGAAGGTCTTAAGCGACTGGCCAAGTCTGATCCTATGGTGCAGTGTACAATTGAGGAGAGTGGGGAACACATTGTGGCAGGAGCCGGAGAACTGCATTTGGAAATCTGTCTGAAGGATTTAGAAGAAGACCATGCTTGTATTCCTCTCAAGAAATCAGATCCAGTGGTATCATACCGTGAAACAGTATCTGAGACATCCTCCCAAACATGTCTTTCAAAGTCGCCAAACAAGCATAACCGTCTGTTCATGACAGCGACTCCTTTCCCTGAAGGTCTTGCTGAAGATATAGACAAAGGAGACGTGAGTTCCAGGCAAGATTTTAAAGCTCGTGGCCGCTACTTGGCTGAAAAGTATGAATACGATCCAACAGAGGCACGTAAGATTTGGTGCTTTGGACCCGAGGGAACTGGTCCCAACTTGGTGATTGACTGTACAAAGGGAGTACAATATCTGAATGAAATCAAGGATAGTGTGGTAGCAGGATTCCAATGGGCGATGAAAGAAGGTGTTCTCTGTGACGAAAATGTGCGTGGTGTGAGGTTCAACATCCACGATGTCACTCTTCATGCTGATGCAATTCACCGTGGTGGTGGACAGATTATTCCAACTGCTCGTCGCTGTTTCTTAGCCTGCATGCTGACTGCTGCGCCCACCATCATGGAGCCAGTTTATTTGTGCGAAATTCAGTGTCCTGAGGCTGCAGTTGGAGGAATTTATGGAGTGCTGAACAGGAGACGAGGGCATGTTTTTGAAGAGAGCCAAGTGGCTGGAACTCCCATGTTTGTTGTTAAGGCATACCTGCCTGTTAATGAGTCATTTGGTTTCACTGCAGACCTTCGCTCCAACACTGGTGGCCAGGCCTTCCCTCAGTGTGTGTTTGACCACTGGCAGACAATGCAAGGTGATGCCACAGACGCCACGACAAAGCCTGGTACTGTAGTGTTTACCACAAGGAAGAGGAAGGGTCTATCGGAGGAACTGCCACCTTTGGATAGGTTCTTGGATAAACTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13060	Eukaryotic translation elongation factor 2 OS=Drosophila melanogaster OX=7227 GN=eEF2 PE=1 SV=4
Q1HPK6	Translation elongation factor 2 OS=Bombyx mori OX=7091 GN=tef2 PE=1 SV=1
Q6P3J5	Elongation factor 2b OS=Danio rerio OX=7955 GN=eef2b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001696 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF14492 all species →	EFG_III	Elongation Factor G, domain III	Domain	Interproscan
PF03764 all species →	EFG_IV	Elongation factor G, domain IV	Domain	Interproscan
PF00679 all species →	EFG_C	Elongation factor G C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR005517 all species →	Domain	Translation elongation factor EFG/EF2, domain IV	Interproscan
IPR041095 all species →	Domain	Elongation Factor G, domain II	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR000640 all species →	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR031157 all species →	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035647 all species →	Homologous_superfamily	EF-G domain III/V-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42908 all species →	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03234	EEF2; elongation factor 2	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.