Genomic Location: Ap1:1681083...1682183
NR annotation: KAJ7385400.1, COUP transcription factor 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.187.1.5f15dd04 |
| Transcript |
| evm.model.Ap1.187.1.5f15dd04 |
| Protein |
| evm.model.Ap1.187.1.5f15dd04 |
| UniProt accession | Description |
|---|---|
| Q60632 | COUP transcription factor 1 OS=Mus musculus OX=10090 GN=Nr2f1 PE=2 SV=2 |
| P10589 | COUP transcription factor 1 OS=Homo sapiens OX=9606 GN=NR2F1 PE=1 SV=1 |
| Q9TTR8 | COUP transcription factor 1 OS=Bos taurus OX=9913 GN=NR2F1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000308 (this species only) |
| Transcription factor family | ESR-like · all TF in this species |
| Transcription factor family | Miscellaneous · all TF in this species |
| Transcription factor family | NGFIB-like · all TF in this species |
| Transcription factor family | RXR-like · all TF in this species |
| Transcription factor family | THR-like · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00104 all species → | Hormone_recep | Ligand-binding domain of nuclear hormone receptor | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035500 all species → | Homologous_superfamily | Nuclear hormone receptor-like domain superfamily | Interproscan |
| IPR000536 all species → | Domain | Nuclear hormone receptor, ligand-binding domain | Interproscan |
| IPR050274 all species → | Family | Nuclear hormone receptor family NR2 subfamily | Interproscan |
| IPR001723 all species → | Family | Nuclear hormone receptor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24083 all species → | NUCLEAR HORMONE RECEPTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0004879 all species → | Molecular Function | nuclear receptor activity | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0030154 all species → | Biological Process | cell differentiation | Interproscan |
| GO:0048856 all species → | Biological Process | anatomical structure development | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14032 | NR2F3, svp; nuclear receptor subfamily 2 group F member 3 | - | Nuclear receptors | ko03310 | deepkoala |
Transcript abundance of evm.model.Ap1.187.1.5f15dd04 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
