Detailed information of evm.model.Ap1.1880 in Astrangia poculata

Genomic Location: Ap1:19582253...19598972
NR annotation: XP_020628904.1, leucine-rich repeats and immunoglobulin-like domains protein 1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P1C6Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Mus musculus OX=10090 GN=Lrig3 PE=1 SV=1
O89026Roundabout homolog 1 OS=Mus musculus OX=10090 GN=Robo1 PE=1 SV=1
Q9Y6N7Roundabout homolog 1 OS=Homo sapiens OX=9606 GN=ROBO1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006554 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13927
all species →		Ig_3Immunoglobulin domainDomainInterproscan
PF13855
all species →		LRR_8Leucine rich repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR050467
all species →		FamilyLeucine-rich repeat and fibronectin type-III domain-containingInterproscan
IPR000372
all species →		DomainLeucine-rich repeat N-terminal domainInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR003591
all species →		RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR000483
all species →		DomainCysteine-rich flanking region, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45842
all species →		SYNAPTIC ADHESION-LIKE MOLECULE SALMInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.1880.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP