Gene detail

Detailed information of evm.model.Ap1.1958 in Astrangia poculata

Genomic Location: Ap1:20382935...20385985
NR annotation: XP_027053635.1, uncharacterized protein LOC113680783 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.1958

atgtggtatgaggaaaaagaaatgtttctcagaggtccatctcgccctcgattctcagaaactcttacgccatttcgcgcggagtacaaacctctatcaaaggaaaaattggagaaggaagacctcacgaggcctgacgagagaattccatctcttgacatcgacaaagcagatcccgactcaaagatcaacttgaagaagtcagtttcgtatcgacacagagctacaagagaaataggtgactctggtactgaatttgataatatcacttgtaacagtgattcctcttgtaaggataaatgcagcaccgaaagagaccctggaccaaccaaggaggacatctactgcttctgcgatgaacactgtatggtattccaagactgctgtgcagattacgaacaggcttgtctctcaatcggacatcaaaattcatcacgttccctggatgccgagctatggcagtgtaataataatgctggtagtgttgagggtacaaagggcgtatggatgatctcggcatgccctgcaaactggacccgagatggaattgccataaactgcactggaaatatgcaacatctgtctggagattgtcaaaattttgcgccggtgacagacgagagaggaaatacttataagaatcgcttctgcgcactgtgtcatggggttcaagctaatgcaagtggattttatgatgcacagctgattctaaatgtgaagaatgtgacaaagagtacatacaacacttcgcgatccatgccgatcaactgttcctatgtgaaatggaagcctcccccaggggttcccaggcgatactgtcttgagttgacaaaaaacgagtcgtgcttaaacaactcatcaagactacaagatcacagtgaatgtttatcaagaccaccaggaattgtcaaggacatgacggacaactccaaactgtattttaacagatattgtgcactttgtgctggtgttgctcttgatgtcatggcatgtgcgccaaccgaaccccaggttgtaaatcaccggcccgaaatttacacggggcccatttccgtcttatttagcctagacagtcggcaagataaatcctgtcaggatggccatgttttggatcctgtttctaagaaatgcaaaaaggtccttaaaaacgccaaaccttctgtgcctttccttaacaggtatacgacaacagtccagtttagatcgcgatatggatgcgcggatagcaaccgttcaaaagcagatataaggaatgccctagaatcggcattaaaacactgctctgcagaggtatttaagatagatgtgagttgcagcagtgatgatttaagttatgctgcacgcattactgttgccttcccagaagctaatttaattcaaaacattcgttacattaactgtaatttaactataaggaatacatcgtttcttgtaatcaaagggaagtgggagcccatattatgtgccaaaattgacatttacaaatcggacgagtatgttgttatagcagatgctgactcagcagtttatattaacagaactggagagctgtttcgtaaagcagactattggtcaaatcaaactgaaaccagcaacggctcggtggttccattaggtcacattcatgtctgtcggaaaacactcgggtgttcgggtgaattcgttcaactggagggaaacgagtatgtcattctatcgaatggatccttgtacatgatcgggtctcatgtaatcaatgatgttttaacgctagacggaaagcctgcaatctgcataaccccttcttctgacagtagcacgactccgactgatgtggctcttgtaattatctctaatgttggaataggtctttctgttgtctgtcttttacttgtcctagtaacgtattccttgtttaaggaactccgcactgtgcctggtgtcaacctgatgaacctatgcctgtccttactccttgcacattctttgctcatggcggttggtgcgattcacattcgcctcatttgcacatcaattgctgttctgttgcattattttttcttgtcgtcttttgtgtggatgtcaatcatcgcatttgacacttaccgcacattttccagagcttgtcatactcgccagggaacaggacagttgaaggctcgcttccttgcacttggttggcttcctgccctagtctttgttgtcatttgtttttctcttgaccaatcaggactggttgctattggatacggtggtagggaccattgttggataaacaatcccaaaactaacacgtttgtgttcgtagttccagtggccttctctattttgtttaacgggctgtttttcttgttgacggttatttctattcggaagattaaaaagcaaacacaaaaagtggcgaacgctgcaaacagtcgtagaagcatggtgttatttgtaaaacttgctgtgttgatgggtttcacgtgggtttttggctatctgatgattctcgttccaaactattcagtttattttgaatatccatttgtcatcttcacttcgcttcaaggtgtttacatagcgtttgggtttgtgttcacagccagagtaaagaagatgtatggtagtttgttttcagttaccatagtaagaccctcttctacgtcgtcttgtgaaactcacttttag

Transcript

evm.model.Ap1.1958

ATGTGGTATGAGGAAAAAGAAATGTTTCTCAGAGGTCCATCTCGCCCTCGATTCTCAGAAACTCTTACGCCATTTCGCGCGGAGTACAAACCTCTATCAAAGGAAAAATTGGAGAAGGAAGACCTCACGAGGCCTGACGAGAGAATTCCATCTCTTGACATCGACAAAGCAGATCCCGACTCAAAGATCAACTTGAAGAAGTCAGTTTCGTATCGACACAGAGCTACAAGAGAAATAGGTGACTCTGGTACTGAATTTGATAATATCACTTGTAACAGTGATTCCTCTTGTAAGGATAAATGCAGCACCGAAAGAGACCCTGGACCAACCAAGGAGGACATCTACTGCTTCTGCGATGAACACTGTATGGTATTCCAAGACTGCTGTGCAGATTACGAACAGGCTTGTCTCTCAATCGGACATCAAAATTCATCACGTTCCCTGGATGCCGAGCTATGGCAGTGTAATAATAATGCTGGTAGTGTTGAGGGTACAAAGGGCGTATGGATGATCTCGGCATGCCCTGCAAACTGGACCCGAGATGGAATTGCCATAAACTGCACTGGAAATATGCAACATCTGTCTGGAGATTGTCAAAATTTTGCGCCGGTGACAGACGAGAGAGGAAATACTTATAAGAATCGCTTCTGCGCACTGTGTCATGGGGTTCAAGCTAATGCAAGTGGATTTTATGATGCACAGCTGATTCTAAATGTGAAGAATGTGACAAAGAGTACATACAACACTTCGCGATCCATGCCGATCAACTGTTCCTATGTGAAATGGAAGCCTCCCCCAGGGGTTCCCAGGCGATACTGTCTTGAGTTGACAAAAAACGAGTCGTGCTTAAACAACTCATCAAGACTACAAGATCACAGTGAATGTTTATCAAGACCACCAGGAATTGTCAAGGACATGACGGACAACTCCAAACTGTATTTTAACAGATATTGTGCACTTTGTGCTGGTGTTGCTCTTGATGTCATGGCATGTGCGCCAACCGAACCCCAGGTTGTAAATCACCGGCCCGAAATTTACACGGGGCCCATTTCCGTCTTATTTAGCCTAGACAGTCGGCAAGATAAATCCTGTCAGGATGGCCATGTTTTGGATCCTGTTTCTAAGAAATGCAAAAAGGTCCTTAAAAACGCCAAACCTTCTGTGCCTTTCCTTAACAGGTATACGACAACAGTCCAGTTTAGATCGCGATATGGATGCGCGGATAGCAACCGTTCAAAAGCAGATATAAGGAATGCCCTAGAATCGGCATTAAAACACTGCTCTGCAGAGGTATTTAAGATAGATGTGAGTTGCAGCAGTGATGATTTAAGTTATGCTGCACGCATTACTGTTGCCTTCCCAGAAGCTAATTTAATTCAAAACATTCGTTACATTAACTGTAATTTAACTATAAGGAATACATCGTTTCTTGTAATCAAAGGGAAGTGGGAGCCCATATTATGTGCCAAAATTGACATTTACAAATCGGACGAGTATGTTGTTATAGCAGATGCTGACTCAGCAGTTTATATTAACAGAACTGGAGAGCTGTTTCGTAAAGCAGACTATTGGTCAAATCAAACTGAAACCAGCAACGGCTCGGTGGTTCCATTAGGTCACATTCATGTCTGTCGGAAAACACTCGGGTGTTCGGGTGAATTCGTTCAACTGGAGGGAAACGAGTATGTCATTCTATCGAATGGATCCTTGTACATGATCGGGTCTCATGTAATCAATGATGTTTTAACGCTAGACGGAAAGCCTGCAATCTGCATAACCCCTTCTTCTGACAGTAGCACGACTCCGACTGATGTGGCTCTTGTAATTATCTCTAATGTTGGAATAGGTCTTTCTGTTGTCTGTCTTTTACTTGTCCTAGTAACGTATTCCTTGTTTAAGGAACTCCGCACTGTGCCTGGTGTCAACCTGATGAACCTATGCCTGTCCTTACTCCTTGCACATTCTTTGCTCATGGCGGTTGGTGCGATTCACATTCGCCTCATTTGCACATCAATTGCTGTTCTGTTGCATTATTTTTTCTTGTCGTCTTTTGTGTGGATGTCAATCATCGCATTTGACACTTACCGCACATTTTCCAGAGCTTGTCATACTCGCCAGGGAACAGGACAGTTGAAGGCTCGCTTCCTTGCACTTGGTTGGCTTCCTGCCCTAGTCTTTGTTGTCATTTGTTTTTCTCTTGACCAATCAGGACTGGTTGCTATTGGATACGGTGGTAGGGACCATTGTTGGATAAACAATCCCAAAACTAACACGTTTGTGTTCGTAGTTCCAGTGGCCTTCTCTATTTTGTTTAACGGGCTGTTTTTCTTGTTGACGGTTATTTCTATTCGGAAGATTAAAAAGCAAACACAAAAAGTGGCGAACGCTGCAAACAGTCGTAGAAGCATGGTGTTATTTGTAAAACTTGCTGTGTTGATGGGTTTCACGTGGGTTTTTGGCTATCTGATGATTCTCGTTCCAAACTATTCAGTTTATTTTGAATATCCATTTGTCATCTTCACTTCGCTTCAAGGTGTTTACATAGCGTTTGGGTTTGTGTTCACAGCCAGAGTAAAGAAGATGTATGGTAGTTTGTTTTCAGTTACCATAGTAAGACCCTCTTCTACGTCGTCTTGTGAAACTCACTTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2Q421	Adhesion G protein-coupled receptor E2 OS=Canis lupus familiaris OX=9615 GN=ADGRE2 PE=2 SV=2
G5ECX0	Latrophilin-like protein LAT-2 OS=Caenorhabditis elegans OX=6239 GN=lat-2 PE=2 SV=1
Q9NYQ7	Cadherin EGF LAG seven-pass G-type receptor 3 OS=Homo sapiens OX=9606 GN=CELSR3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000178 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF01033 all species →	Somatomedin_B	Somatomedin B domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR053231 all species →	Family	G-protein coupled receptor LN-TM7	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR001212 all species →	Domain	Somatomedin B domain	Interproscan
IPR036024 all species →	Homologous_superfamily	Somatomedin B-like domain superfamily	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45902 all species →	LATROPHILIN RECEPTOR-LIKE PROTEIN A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.1958.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.