Gene detail

Detailed information of evm.model.Ap1.20 in Astrangia poculata

Genomic Location: Ap1:195650...198873
NR annotation: XP_020615149.1, DET1 homolog [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7L5Y6	DET1 homolog OS=Homo sapiens OX=9606 GN=DET1 PE=1 SV=2
Q9D0A0	DET1 homolog OS=Mus musculus OX=10090 GN=Det1 PE=2 SV=2
Q9ZNU6	Light-mediated development protein DET1 OS=Solanum lycopersicum OX=4081 GN=DET1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007416 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09737 all species →	Det1	De-etiolated protein 1 Det1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019138 all species →	Family	De-etiolated protein 1, Det1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13374 all species →	DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031461 all species →	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:1990756 all species →	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10571	DET1; de-etiolated-1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.