Gene detail

Detailed information of evm.model.Ap1.2225 in Astrangia poculata

Genomic Location: Ap1:23326735...23347482
NR annotation: XP_022786863.1, LOW QUALITY PROTEIN: uncharacterized protein LOC111327042 [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2225

atgggaagtgtcactggcgagctggtcaacaatggacactctccaacctttactattgacaagtccagaggtactgctttactcactgggggtccctggggtaacaacgtttataagcttgagcagcttcactttcattttggttgcgacgcctcgaaaggatctgaacacactgcgaacgggatagcatactccggagaacttcatctggtagcttataacacaaagtatcccgattttgcatctgccgctgacaaacaagatggcctgactgtaattggtgtcttgcttcgggatgataatggtgacccatggaatcccgagtggcagcagttgacagctggcatggggcggataaccaaagcagatgccaataatggggtcgtattaagcttgaacctgttgaagttggtgcctcagctaagtaatccatcgttctacttttataagggatctctgacaactcctccctgccatcagtccgttaactggatggtgctactatatccagtttctacaagtagggaagtggaattggaagaaacgcctggttacggcgcgaccattaatgacgatgatgggttggatgctggcagtgagcacgatgcagaggaaagctctgatgaggatattgacgacgacgaggacgatgcacatatggaagaagaaactcagacaactgagaaagagtgtgttggaagtttacaagcatttcgttcgcttggctgtgatataactgacatctcaaaaagtgttttgttcgctgatgctgctattaacaatttgtcctcatcggctgcggaatgccatcaactgttaaagattttgggttacctgcctcttgattggctgtcagatgacaatcatatccgctgccttattggcttgttttcatgcgacgttcttcttaattctaacatttttcaggagtgttccgctgacctgttgaagccgctgtcactgagtcgtcaacttctcaccgtactgtttgacggttgtgtcaccagacgaaggttcatagcgcatcatgtgattgactttgaagctcttcatgcctggcttattggctcggcttccaagctatggcgacactaccacacggatcaagcctttgtgagtaatatgaatgttatgctgagagataccagagggcttcttttctcgacgttcaagtacctactcagggctccatcgcaaattgcttatgctggccagagcacaatacaaaagcttaaggaagacttggagactttttcctcagaagtgcagcaatgttcaaaggattctttgaagaagactatgagttcacatcatgcagtttcagtcgtagtagaaggactcctggctttgtgcgaagaagttgtttctaacaagacgtcctccagcaaaatgattcggatttcttctgatgtcgtgataaaacttggccctgctctgctggagttgctgagatcaattgtacgagtatcacagagaaaacaaaagggagagaaagctggagatggcgacaaaagtacattgcacgacattctttgtcaatttcccattttgatcgattcttttacatcggtgcttcatatttacgcagttgtagagcaatcaaggaaactgatgcgtgttaaggaggtttacaaggagtgcaattggcaagatgtgtttgacgtcacactgacagctgtcattcatcgtctgttcgagcgggacctgacgaattcaccagagaacgagaatgagattggaaccttacattcctgtcttcgtttcctcaaagtggtgtgtctgtcgtgttcaaaactggagctacatttaccagacgattttcacatccgacttctcgcgtccacacttcatttcttaagattattgaaacttagcaaaaacaattctaccgaagctcccaagaatgattgccttcatcttgaaaagaaacatgtcgggcatcaaagtgtaaggagagaaatgcaaatggcgaaggaaggaaagtgtttgggaattgaagacattgtcgaggagggttattgtcttgttgtgtctttgcttcaaggatgtgatcccggtctacttccagcgctacttgaaggattgggcgacgaaattaccacaaagaactgcagtgatgcttcttttgaacgactgcgcgtggcccttcatgtctggcatcgtctattgagtggacgtttcaccaaggacagaaagaaagagctccgtccaaaactaccaaagattctgtttgctatgcagtttgtgttacagcaattgaaaactgacaaccttggaattgtcaatctggccactgatgtcatggtcaaaattctatctcttggaaagggaatggtgcttcctcataacgccctcctcgttcttcacagcggcttgaacaagcttgcagctaatgacgagagttttccgcaattgtttcaatcccagtactctttgttgagcacacttctctttcagcactcggaggctgtctatggagctgtgcacgtgtttatcacaggtgttcgaaatcttttgttaagcttgatacaaagctgtgatgagcggagcaaagatgcagttgaacaagatggaagtcaaacgacaggaaaaatatttaaaccaagagaattatcacaaagcgcacaaaagatggcaagattataccaggaaatatctacacacaaaaacgcgttttccaagtattctccttacatgatcgctgactatatccacgctatccagactgttgctgttcctccagttatcagggacgctctcgttcctggggttaactgtctgttggacttgtgcggtgagcatgaactgtcgcttctacacgctgtcctagagaaaggatcgcgggagctctttcattccttgcacgcagactacacgaagtaccacaagtttaagggaaaagtatga

Transcript

evm.model.Ap1.2225

ATGGGAAGTGTCACTGGCGAGCTGGTCAACAATGGACACTCTCCAACCTTTACTATTGACAAGTCCAGAGGTACTGCTTTACTCACTGGGGGTCCCTGGGGTAACAACGTTTATAAGCTTGAGCAGCTTCACTTTCATTTTGGTTGCGACGCCTCGAAAGGATCTGAACACACTGCGAACGGGATAGCATACTCCGGAGAACTTCATCTGGTAGCTTATAACACAAAGTATCCCGATTTTGCATCTGCCGCTGACAAACAAGATGGCCTGACTGTAATTGGTGTCTTGCTTCGGGATGATAATGGTGACCCATGGAATCCCGAGTGGCAGCAGTTGACAGCTGGCATGGGGCGGATAACCAAAGCAGATGCCAATAATGGGGTCGTATTAAGCTTGAACCTGTTGAAGTTGGTGCCTCAGCTAAGTAATCCATCGTTCTACTTTTATAAGGGATCTCTGACAACTCCTCCCTGCCATCAGTCCGTTAACTGGATGGTGCTACTATATCCAGTTTCTACAAGTAGGGAAGTGGAATTGGAAGAAACGCCTGGTTACGGCGCGACCATTAATGACGATGATGGGTTGGATGCTGGCAGTGAGCACGATGCAGAGGAAAGCTCTGATGAGGATATTGACGACGACGAGGACGATGCACATATGGAAGAAGAAACTCAGACAACTGAGAAAGAGTGTGTTGGAAGTTTACAAGCATTTCGTTCGCTTGGCTGTGATATAACTGACATCTCAAAAAGTGTTTTGTTCGCTGATGCTGCTATTAACAATTTGTCCTCATCGGCTGCGGAATGCCATCAACTGTTAAAGATTTTGGGTTACCTGCCTCTTGATTGGCTGTCAGATGACAATCATATCCGCTGCCTTATTGGCTTGTTTTCATGCGACGTTCTTCTTAATTCTAACATTTTTCAGGAGTGTTCCGCTGACCTGTTGAAGCCGCTGTCACTGAGTCGTCAACTTCTCACCGTACTGTTTGACGGTTGTGTCACCAGACGAAGGTTCATAGCGCATCATGTGATTGACTTTGAAGCTCTTCATGCCTGGCTTATTGGCTCGGCTTCCAAGCTATGGCGACACTACCACACGGATCAAGCCTTTGTGAGTAATATGAATGTTATGCTGAGAGATACCAGAGGGCTTCTTTTCTCGACGTTCAAGTACCTACTCAGGGCTCCATCGCAAATTGCTTATGCTGGCCAGAGCACAATACAAAAGCTTAAGGAAGACTTGGAGACTTTTTCCTCAGAAGTGCAGCAATGTTCAAAGGATTCTTTGAAGAAGACTATGAGTTCACATCATGCAGTTTCAGTCGTAGTAGAAGGACTCCTGGCTTTGTGCGAAGAAGTTGTTTCTAACAAGACGTCCTCCAGCAAAATGATTCGGATTTCTTCTGATGTCGTGATAAAACTTGGCCCTGCTCTGCTGGAGTTGCTGAGATCAATTGTACGAGTATCACAGAGAAAACAAAAGGGAGAGAAAGCTGGAGATGGCGACAAAAGTACATTGCACGACATTCTTTGTCAATTTCCCATTTTGATCGATTCTTTTACATCGGTGCTTCATATTTACGCAGTTGTAGAGCAATCAAGGAAACTGATGCGTGTTAAGGAGGTTTACAAGGAGTGCAATTGGCAAGATGTGTTTGACGTCACACTGACAGCTGTCATTCATCGTCTGTTCGAGCGGGACCTGACGAATTCACCAGAGAACGAGAATGAGATTGGAACCTTACATTCCTGTCTTCGTTTCCTCAAAGTGGTGTGTCTGTCGTGTTCAAAACTGGAGCTACATTTACCAGACGATTTTCACATCCGACTTCTCGCGTCCACACTTCATTTCTTAAGATTATTGAAACTTAGCAAAAACAATTCTACCGAAGCTCCCAAGAATGATTGCCTTCATCTTGAAAAGAAACATGTCGGGCATCAAAGTGTAAGGAGAGAAATGCAAATGGCGAAGGAAGGAAAGTGTTTGGGAATTGAAGACATTGTCGAGGAGGGTTATTGTCTTGTTGTGTCTTTGCTTCAAGGATGTGATCCCGGTCTACTTCCAGCGCTACTTGAAGGATTGGGCGACGAAATTACCACAAAGAACTGCAGTGATGCTTCTTTTGAACGACTGCGCGTGGCCCTTCATGTCTGGCATCGTCTATTGAGTGGACGTTTCACCAAGGACAGAAAGAAAGAGCTCCGTCCAAAACTACCAAAGATTCTGTTTGCTATGCAGTTTGTGTTACAGCAATTGAAAACTGACAACCTTGGAATTGTCAATCTGGCCACTGATGTCATGGTCAAAATTCTATCTCTTGGAAAGGGAATGGTGCTTCCTCATAACGCCCTCCTCGTTCTTCACAGCGGCTTGAACAAGCTTGCAGCTAATGACGAGAGTTTTCCGCAATTGTTTCAATCCCAGTACTCTTTGTTGAGCACACTTCTCTTTCAGCACTCGGAGGCTGTCTATGGAGCTGTGCACGTGTTTATCACAGGTGTTCGAAATCTTTTGTTAAGCTTGATACAAAGCTGTGATGAGCGGAGCAAAGATGCAGTTGAACAAGATGGAAGTCAAACGACAGGAAAAATATTTAAACCAAGAGAATTATCACAAAGCGCACAAAAGATGGCAAGATTATACCAGGAAATATCTACACACAAAAACGCGTTTTCCAAGTATTCTCCTTACATGATCGCTGACTATATCCACGCTATCCAGACTGTTGCTGTTCCTCCAGTTATCAGGGACGCTCTCGTTCCTGGGGTTAACTGTCTGTTGGACTTGTGCGGTGAGCATGAACTGTCGCTTCTACACGCTGTCCTAGAGAAAGGATCGCGGGAGCTCTTTCATTCCTTGCACGCAGACTACACGAAGTACCACAAGTTTAAGGGAAAAGTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8UWA5	Carbonic anhydrase 2 OS=Pseudaspius hakonensis OX=3004147 GN=ca2 PE=2 SV=3
Q92051	Carbonic anhydrase OS=Danio rerio OX=7955 GN=cahz PE=1 SV=2
B0BNN3	Carbonic anhydrase 1 OS=Rattus norvegicus OX=10116 GN=Ca1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003024 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10441 all species →	Urb2	Urb2/Npa2 family	Family	Interproscan
PF00194 all species →	Carb_anhydrase	Eukaryotic-type carbonic anhydrase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001148 all species →	Domain	Alpha carbonic anhydrase domain	Interproscan
IPR052609 all species →	Family	Ribosome Biogenesis Regulator	Interproscan
IPR036398 all species →	Homologous_superfamily	Alpha carbonic anhydrase domain superfamily	Interproscan
IPR018849 all species →	Domain	Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15682 all species →	UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.2225.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.