Gene detail

Detailed information of evm.model.Ap1.227 in Astrangia poculata

Genomic Location: Ap1:2149706...2163298
NR annotation: XP_022783618.1, dimethylglycine dehydrogenase, mitochondrial-like [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.227

atggcgtccgtgcttcgagttggaagtctactacgtggaatatctcgaggctatggcgccgagacgtgccttaaacgatgtgcctttctttcgtgcacatcgtggcgacacaacagctcaggctcaagcacttctaaactaaacaagcgtctgaaagaagatgccgaagttgttgtcattggaggtggtgtcctgggcaccagcatcgcatatcatctggccaaacagggcatgaaggatgtcgtactcttagaaaaatctgaattaactgctggatcaacatggcatgcggctggactcaccacgtattttcatcctggaataaaccttaaacatattcactattatagcattcagctgtttaacaaactagaggaggaaacggggcagaatgtaggttttcacacgccagggagtttgaggctgtgtacaactcctgagcgtatggatgaagctaaataccagatgcaacgacaaggatggcataaagcaccgcagtggcttgttacgcctgatgaaattgcaaagatgcacccgcttctgaaaatggatgatatcttgggtggcttgtttaaccctgatgagggccatattgatccgtactcactgacacaagcgctggccattggagccagaaagtatggtgctgaactttacatgcctgctccagtcacttcactcacacagaggacagatggaggatgggatgtgggcactgaacatggcaccattaaggctaaacatgtggttaatgctgcagggttctggggtcgtgaagtgggcctcatggcaggcatggaccttccaatggtagccattcaccatcagtatgtagtcacgtccaccattcctgaagtcgcagcccttgagcatgaagttcctgtcatacgagatcttgaagggtcttactactgtcgtcaggagaggcagggcttgttatttggaccttatgaacatccagacaagatgaagttgcaggaggaatggtgggatagtgtgacaccaggctttggaaaagaactgtttgaaagtgacttggatagaatcagtgacaatacagccatggcaatggagcgtataccagtgctagctgatgcaaacattgcaagcgtcgtgtcaggtcctataacttacagtcctgatgtgctgtcaatgactggacctgcttttgacgcacctaacatgtggcttgctgttgggactggttatggtattattcatggaggtggcattggcaagtatcttgctgattggataatagatggggagccaccttatgatcttaatgaactagatcagggtcgttatggcaagtgggcaacaaaagattatgttttggctaaagcaagggagtcgtatggcctaaataaccaaattggccatcccaaactggaacgaccagcaggacgtccaataagaaagaatgctatttttgagcgtcttgtggaacgaggtgcagaaatgggattccatgttggctgggagcagccaaactggtttgctctgccaggtgacgatgcaggttacaagccaagtttccgcaggtcaaactggtttgaaccagttggacgagagtatgacttggtacttaacaatgttggcattattgacctgacgccatttggaaagtttgaggtggaaggaaaggatgcatcaaagttcttggacgtcatggttgccaatgctttaccaaaggttggctgtacaaacatcagccacatgttgagtccaaaaggcaaggtgtatgctgagtttaccgtctccactatttcacctgatcattatttcttactgacaggaagttcttctgaattccatgatctcaggtggttacatgactacgccaagaaaggaaattacgatgttaccattaaaaatgtcacagatgatatttcatgtcttggtattgctggacctcacgcccgcagcgtgttgtccagcctcacatctgaagatctcagccacagcgggtttaaattcctgacgatcagagacatggaactcgctggtgtccctgtgcgtgctatgcgaatttcttacactggtgaacttggttgggagttataccacaagaacgaacacaccgccgagttgtacgaagctctgttgaaggctggggagaagtttggtattggagactttggtacttatgccatgacgtcattgagggtggagaagggatttagagcctggggtctagagatgaatatggacaccacccccctggaggctggtttggactactttatcaaatttgacaagggtgtggacttcattggtcgagaagctttacttaagcacaaggaaaatggaatcaagaagaagctgtgcatgctgacggtagagacaactgatgtggaccctgaaggcaatgaaaccatttggtttggaggaaaggttgttggcaacacgacgtccggtgcatacagctacagacttaagaaaagcatttcactagcctatttaccgctggaactgacagagataggatcacgagtggaagtggagttattaggtgccaagtgccccgccgttgtagtcaaagaaccattgtttgacacggaacctgtacgcaccagacgacagctaaaagccgcgaagaaagacaagaccactgtataa

Transcript

evm.model.Ap1.227

ATGGCGTCCGTGCTTCGAGTTGGAAGTCTACTACGTGGAATATCTCGAGGCTATGGCGCCGAGACGTGCCTTAAACGATGTGCCTTTCTTTCGTGCACATCGTGGCGACACAACAGCTCAGGCTCAAGCACTTCTAAACTAAACAAGCGTCTGAAAGAAGATGCCGAAGTTGTTGTCATTGGAGGTGGTGTCCTGGGCACCAGCATCGCATATCATCTGGCCAAACAGGGCATGAAGGATGTCGTACTCTTAGAAAAATCTGAATTAACTGCTGGATCAACATGGCATGCGGCTGGACTCACCACGTATTTTCATCCTGGAATAAACCTTAAACATATTCACTATTATAGCATTCAGCTGTTTAACAAACTAGAGGAGGAAACGGGGCAGAATGTAGGTTTTCACACGCCAGGGAGTTTGAGGCTGTGTACAACTCCTGAGCGTATGGATGAAGCTAAATACCAGATGCAACGACAAGGATGGCATAAAGCACCGCAGTGGCTTGTTACGCCTGATGAAATTGCAAAGATGCACCCGCTTCTGAAAATGGATGATATCTTGGGTGGCTTGTTTAACCCTGATGAGGGCCATATTGATCCGTACTCACTGACACAAGCGCTGGCCATTGGAGCCAGAAAGTATGGTGCTGAACTTTACATGCCTGCTCCAGTCACTTCACTCACACAGAGGACAGATGGAGGATGGGATGTGGGCACTGAACATGGCACCATTAAGGCTAAACATGTGGTTAATGCTGCAGGGTTCTGGGGTCGTGAAGTGGGCCTCATGGCAGGCATGGACCTTCCAATGGTAGCCATTCACCATCAGTATGTAGTCACGTCCACCATTCCTGAAGTCGCAGCCCTTGAGCATGAAGTTCCTGTCATACGAGATCTTGAAGGGTCTTACTACTGTCGTCAGGAGAGGCAGGGCTTGTTATTTGGACCTTATGAACATCCAGACAAGATGAAGTTGCAGGAGGAATGGTGGGATAGTGTGACACCAGGCTTTGGAAAAGAACTGTTTGAAAGTGACTTGGATAGAATCAGTGACAATACAGCCATGGCAATGGAGCGTATACCAGTGCTAGCTGATGCAAACATTGCAAGCGTCGTGTCAGGTCCTATAACTTACAGTCCTGATGTGCTGTCAATGACTGGACCTGCTTTTGACGCACCTAACATGTGGCTTGCTGTTGGGACTGGTTATGGTATTATTCATGGAGGTGGCATTGGCAAGTATCTTGCTGATTGGATAATAGATGGGGAGCCACCTTATGATCTTAATGAACTAGATCAGGGTCGTTATGGCAAGTGGGCAACAAAAGATTATGTTTTGGCTAAAGCAAGGGAGTCGTATGGCCTAAATAACCAAATTGGCCATCCCAAACTGGAACGACCAGCAGGACGTCCAATAAGAAAGAATGCTATTTTTGAGCGTCTTGTGGAACGAGGTGCAGAAATGGGATTCCATGTTGGCTGGGAGCAGCCAAACTGGTTTGCTCTGCCAGGTGACGATGCAGGTTACAAGCCAAGTTTCCGCAGGTCAAACTGGTTTGAACCAGTTGGACGAGAGTATGACTTGGTACTTAACAATGTTGGCATTATTGACCTGACGCCATTTGGAAAGTTTGAGGTGGAAGGAAAGGATGCATCAAAGTTCTTGGACGTCATGGTTGCCAATGCTTTACCAAAGGTTGGCTGTACAAACATCAGCCACATGTTGAGTCCAAAAGGCAAGGTGTATGCTGAGTTTACCGTCTCCACTATTTCACCTGATCATTATTTCTTACTGACAGGAAGTTCTTCTGAATTCCATGATCTCAGGTGGTTACATGACTACGCCAAGAAAGGAAATTACGATGTTACCATTAAAAATGTCACAGATGATATTTCATGTCTTGGTATTGCTGGACCTCACGCCCGCAGCGTGTTGTCCAGCCTCACATCTGAAGATCTCAGCCACAGCGGGTTTAAATTCCTGACGATCAGAGACATGGAACTCGCTGGTGTCCCTGTGCGTGCTATGCGAATTTCTTACACTGGTGAACTTGGTTGGGAGTTATACCACAAGAACGAACACACCGCCGAGTTGTACGAAGCTCTGTTGAAGGCTGGGGAGAAGTTTGGTATTGGAGACTTTGGTACTTATGCCATGACGTCATTGAGGGTGGAGAAGGGATTTAGAGCCTGGGGTCTAGAGATGAATATGGACACCACCCCCCTGGAGGCTGGTTTGGACTACTTTATCAAATTTGACAAGGGTGTGGACTTCATTGGTCGAGAAGCTTTACTTAAGCACAAGGAAAATGGAATCAAGAAGAAGCTGTGCATGCTGACGGTAGAGACAACTGATGTGGACCCTGAAGGCAATGAAACCATTTGGTTTGGAGGAAAGGTTGTTGGCAACACGACGTCCGGTGCATACAGCTACAGACTTAAGAAAAGCATTTCACTAGCCTATTTACCGCTGGAACTGACAGAGATAGGATCACGAGTGGAAGTGGAGTTATTAGGTGCCAAGTGCCCCGCCGTTGTAGTCAAAGAACCATTGTTTGACACGGAACCTGTACGCACCAGACGACAGCTAAAAGCCGCGAAGAAAGACAAGACCACTGTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63342	Dimethylglycine dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Dmgdh PE=1 SV=1
Q9UI17	Dimethylglycine dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=DMGDH PE=1 SV=2
Q9DBT9	Dimethylglycine dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Dmgdh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002587 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16350 all species →	FAO_M	FAD dependent oxidoreductase central domain	Family	Interproscan
PF01571 all species →	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan
PF08669 all species →	GCV_T_C	Glycine cleavage T-protein C-terminal barrel domain	Domain	Interproscan
PF01266 all species →	DAO	FAD dependent oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032503 all species →	Domain	FAD dependent oxidoreductase, central domain	Interproscan
IPR006222 all species →	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR013977 all species →	Domain	Glycine cleavage T-protein, C-terminal barrel domain	Interproscan
IPR029043 all species →	Homologous_superfamily	Glycine cleavage T-protein/YgfZ, C-terminal	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR028896 all species →	Family	Aminomethyltransferase-like	Interproscan
IPR027266 all species →	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR006076 all species →	Domain	FAD dependent oxidoreductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43757 all species →	AMINOMETHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00315	DMGDH; dimethylglycine dehydrogenase	EC:1.5.8.4	Glycine, serine and threonine metabolism	ko00260	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.