Detailed information of evm.model.Ap1.2288 in Astrangia poculata

Genomic Location: Ap1:23928903...23929853
NR annotation: XP_020612209.1, transmembrane protein 163-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B0UY98Transmembrane protein 163a OS=Danio rerio OX=7955 GN=tmem163a PE=2 SV=1
F2Z4R5Transmembrane protein 163b OS=Danio rerio OX=7955 GN=tmem163b PE=2 SV=1
A9CMA6Transmembrane protein 163 OS=Rattus norvegicus OX=10116 GN=Tmem163 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0012075 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap1.2288. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR027469
all species →		Homologous_superfamilyCation efflux transmembrane domain superfamilyInterproscan
IPR026765
all species →		FamilyTransmembrane protein 163Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31937
all species →		TRANSMEMBRANE PROTEIN 163Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14694SLC30A11, ZNT11; solute carrier family 30 (zinc transporter), member 11-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap1.2288 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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