Detailed information of evm.model.Ap1.2293 in Astrangia poculata

Genomic Location: Ap1:23956411...23958696
NR annotation: CAH3146973.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2KJC3Macrophage-expressed gene 1 protein OS=Bos taurus OX=9913 GN=MPEG1 PE=2 SV=2
Q5RBP9Macrophage-expressed gene 1 protein OS=Pongo abelii OX=9601 GN=MPEG1 PE=2 SV=1
Q2M385Macrophage-expressed gene 1 protein OS=Homo sapiens OX=9606 GN=MPEG1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002171 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01823
all species →		MACPFMAC/Perforin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020864
all species →		DomainMembrane attack complex component/perforin (MACPF) domainInterproscan
IPR039707
all species →		FamilyMacrophage-expressed gene 1 proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31463
all species →		MACROPHAGE-EXPRESSED GENE 1 PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap1.2293. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K26547MPEG1; macrophage-expressed gene 1 protein-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap1.2293 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP