Gene detail

Detailed information of evm.model.Ap1.2356 in Astrangia poculata

Genomic Location: Ap1:24472364...24489798
NR annotation: CAH3147015.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N1B4	Vacuolar protein sorting-associated protein 52 homolog OS=Homo sapiens OX=9606 GN=VPS52 PE=1 SV=1
Q8C754	Vacuolar protein sorting-associated protein 52 homolog OS=Mus musculus OX=10090 GN=Vps52 PE=1 SV=1
Q5TJF0	Vacuolar protein sorting-associated protein 52 homolog OS=Canis lupus familiaris OX=9615 GN=VPS52 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20655 all species →	Vps52_C	Vps52, C-terminal	Repeat	Interproscan
PF04129 all species →	Vps52_CC	Vps52/Sac2 family, coiled-coil	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048361 all species →	Domain	Vps52, C-terminal	Interproscan
IPR007258 all species →	Family	Vps52	Interproscan
IPR048319 all species →	Domain	Vps52, coiled-coil domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14190 all species →	SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000938 all species →	Cellular Component	GARP complex	Interproscan
GO:0006896 all species →	Biological Process	Golgi to vacuole transport	Interproscan
GO:0007041 all species →	Biological Process	lysosomal transport	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20298	VPS52; vacuolar protein sorting-associated protein 52	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.