Gene detail

Detailed information of evm.model.Ap1.2368 in Astrangia poculata

Genomic Location: Ap1:24616810...24623520
NR annotation: XP_020627039.1, uncharacterized protein LOC110064336, partial [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2368

atgaaaattaaagataccgagagccaagtggatactgaccttattgccggcgagcatttacagcacaactggaagagccagaatcgtgaagagcgaaaggctcgtggtcattttaaggagtttttgcttttcgccgactcagggagacataagatatatacgataaacttggatagccaagcacaaccaagcgccttgaagttaggcaatacaccaagccctgaagcattggactttgacccacaaaaacgcttcatttactggtctgacgtgcagctacgtcagatatcacgtgctcatcctgatggaagtgccaaagaggtcgttgtgaacggtctccaaagacccaaaggacttgcagtggattatgttggacgaaatctttattggacggactttgatgccaataagattgaagttgcaaaactaaacggatcagacaggaaggttctattctctcaaaatgttcagaaacccgtggatattgtgttggacttgaaaaacggaaccatgtattggtcctcttggaataatacaaggccaacgatcgaacgtgcagctatggacggaagtaagaggactacccttgtacggttctcaaactcatggattaatccctctagacctaatggattagcaattgatcctgagaacagtaggctttactgggttgacacgaacaagtatgttatacagtacactgatttacaacaaggcaatggtgcagcagtttccctccccgtgggaagatactatttaatccaggcttacggattaacattgaaagaaaataccatatattggagcacctacggatctatatattcggcagataagaaaactggtggtaatgtacatcgtctaactgggaacgtcatgacacctcgagatgttcatgtgtaccataactatacaggaatacctgaagtatcacatgtgccgtcttcatcaatcgctgcgacacacgggaagcctcaaacaaagtctgcctccttaaagataccaaaaacgccttcatcttccaatccagtaagtgtgacaacaatagtgccatcgtcatcagtctcattcgcctcctccacagcattgccatccccaagggatccatgcacttcaaatccatgtcagaatggtggcacttgtttaaaaggaaaccaaggggaatttacttgtcgatgtcctatgaagtatgcgttgtcacgctgtcaactctatgtagatgacaatgtggtgaaaataacattcaagttgacggctgaccaatggaaagaagacaccttccgggagagcatttcaagggctttcactgagcactgcagcaatcaaagaccctgcagcctggacggtaggactacatctcaaagaacgagtttgatcgctaacattaattttcgtccagatgacgtactggtactcagaagatatcctgaagaaaaaccaggaatgtttactgttgtcacggcggtgctcatacctttagatgaaccacaatcaacagctgaacgggagacaatcccagctgtcattctttgcagaatggtggcgagaacgtcgaaaggtatctcaaagtacatgggtaacatctctatagaactgataaatggagagaaagatccaccatgtgtatcggatgcaggaaacaatgatagcacgaactcgaagggtggagaagctgctggtcaccgtaaagaaaagctgtcttctggagaaatagctggtgctgttgtcggtactttaatatttctgatgatgataattgtggctgctctcttggttttaaggtttcgaagacgaccaactcgagtgactaagtctgctttgagttcttcattcaacaatccgggctacgaaccgcatcctcgtgactataatggcgacgattcagacgcgtctccgttaactatgcctgagtatgagttgcaagatcagttgcatcatggaaacagtgttcatcctgacctcgacagacacaggcccagaagaagatctgcctttgatactgccgatgacaacgaaaaccagtctcgaaaggaaaacaaggcaataaagaaaagtcggtcccgttcaagcaagaccaaggcttctggtcaacttggtcccgcagaagaacgaattgaatatgagaattatacttacggtcatcctaggaataaccaggaaggctgggatggaaatccaaaagttgataatcctcgggaggaaaacacggcggtgaggtcaagccgaccccagccaagcaagacgagagcttctggtcaatttgatttcccagaggcgcacagtacagatgacaatttctcatacgatcctcagcgcagaaataaccaggaaggttcaagagatgaagaagcacctattttatatttggaaagtgaacttggtcctgacgagacaataatttaa

Transcript

evm.model.Ap1.2368

ATGAAAATTAAAGATACCGAGAGCCAAGTGGATACTGACCTTATTGCCGGCGAGCATTTACAGCACAACTGGAAGAGCCAGAATCGTGAAGAGCGAAAGGCTCGTGGTCATTTTAAGGAGTTTTTGCTTTTCGCCGACTCAGGGAGACATAAGATATATACGATAAACTTGGATAGCCAAGCACAACCAAGCGCCTTGAAGTTAGGCAATACACCAAGCCCTGAAGCATTGGACTTTGACCCACAAAAACGCTTCATTTACTGGTCTGACGTGCAGCTACGTCAGATATCACGTGCTCATCCTGATGGAAGTGCCAAAGAGGTCGTTGTGAACGGTCTCCAAAGACCCAAAGGACTTGCAGTGGATTATGTTGGACGAAATCTTTATTGGACGGACTTTGATGCCAATAAGATTGAAGTTGCAAAACTAAACGGATCAGACAGGAAGGTTCTATTCTCTCAAAATGTTCAGAAACCCGTGGATATTGTGTTGGACTTGAAAAACGGAACCATGTATTGGTCCTCTTGGAATAATACAAGGCCAACGATCGAACGTGCAGCTATGGACGGAAGTAAGAGGACTACCCTTGTACGGTTCTCAAACTCATGGATTAATCCCTCTAGACCTAATGGATTAGCAATTGATCCTGAGAACAGTAGGCTTTACTGGGTTGACACGAACAAGTATGTTATACAGTACACTGATTTACAACAAGGCAATGGTGCAGCAGTTTCCCTCCCCGTGGGAAGATACTATTTAATCCAGGCTTACGGATTAACATTGAAAGAAAATACCATATATTGGAGCACCTACGGATCTATATATTCGGCAGATAAGAAAACTGGTGGTAATGTACATCGTCTAACTGGGAACGTCATGACACCTCGAGATGTTCATGTGTACCATAACTATACAGGAATACCTGAAGTATCACATGTGCCGTCTTCATCAATCGCTGCGACACACGGGAAGCCTCAAACAAAGTCTGCCTCCTTAAAGATACCAAAAACGCCTTCATCTTCCAATCCAGTAAGTGTGACAACAATAGTGCCATCGTCATCAGTCTCATTCGCCTCCTCCACAGCATTGCCATCCCCAAGGGATCCATGCACTTCAAATCCATGTCAGAATGGTGGCACTTGTTTAAAAGGAAACCAAGGGGAATTTACTTGTCGATGTCCTATGAAGTATGCGTTGTCACGCTGTCAACTCTATGTAGATGACAATGTGGTGAAAATAACATTCAAGTTGACGGCTGACCAATGGAAAGAAGACACCTTCCGGGAGAGCATTTCAAGGGCTTTCACTGAGCACTGCAGCAATCAAAGACCCTGCAGCCTGGACGGTAGGACTACATCTCAAAGAACGAGTTTGATCGCTAACATTAATTTTCGTCCAGATGACGTACTGGTACTCAGAAGATATCCTGAAGAAAAACCAGGAATGTTTACTGTTGTCACGGCGGTGCTCATACCTTTAGATGAACCACAATCAACAGCTGAACGGGAGACAATCCCAGCTGTCATTCTTTGCAGAATGGTGGCGAGAACGTCGAAAGGTATCTCAAAGTACATGGGTAACATCTCTATAGAACTGATAAATGGAGAGAAAGATCCACCATGTGTATCGGATGCAGGAAACAATGATAGCACGAACTCGAAGGGTGGAGAAGCTGCTGGTCACCGTAAAGAAAAGCTGTCTTCTGGAGAAATAGCTGGTGCTGTTGTCGGTACTTTAATATTTCTGATGATGATAATTGTGGCTGCTCTCTTGGTTTTAAGGTTTCGAAGACGACCAACTCGAGTGACTAAGTCTGCTTTGAGTTCTTCATTCAACAATCCGGGCTACGAACCGCATCCTCGTGACTATAATGGCGACGATTCAGACGCGTCTCCGTTAACTATGCCTGAGTATGAGTTGCAAGATCAGTTGCATCATGGAAACAGTGTTCATCCTGACCTCGACAGACACAGGCCCAGAAGAAGATCTGCCTTTGATACTGCCGATGACAACGAAAACCAGTCTCGAAAGGAAAACAAGGCAATAAAGAAAAGTCGGTCCCGTTCAAGCAAGACCAAGGCTTCTGGTCAACTTGGTCCCGCAGAAGAACGAATTGAATATGAGAATTATACTTACGGTCATCCTAGGAATAACCAGGAAGGCTGGGATGGAAATCCAAAAGTTGATAATCCTCGGGAGGAAAACACGGCGGTGAGGTCAAGCCGACCCCAGCCAAGCAAGACGAGAGCTTCTGGTCAATTTGATTTCCCAGAGGCGCACAGTACAGATGACAATTTCTCATACGATCCTCAGCGCAGAAATAACCAGGAAGGTTCAAGAGATGAAGAAGCACCTATTTTATATTTGGAAAGTGAACTTGGTCCTGACGAGACAATAATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
O75581	Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0014748 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap1.2368. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.2368.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.