Detailed information of evm.model.Ap1.2374 in Astrangia poculata

Genomic Location: Ap1:24677339...24679131
NR annotation: CAH3147050.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q91VN0Low-density lipoprotein receptor-related protein 5 OS=Mus musculus OX=10090 GN=Lrp5 PE=1 SV=3
O75581Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
O88572Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000278 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00058
all species →		Ldl_recept_bLow-density lipoprotein receptor repeat class BRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000033
all species →		RepeatLDLR class B repeatInterproscan
IPR011042
all species →		Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR050778
all species →		FamilyCueball/EGF/LRP/NidogenInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46513
all species →		VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap1.2374. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.2374.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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