Gene detail

Detailed information of evm.model.Ap1.2377 in Astrangia poculata

Genomic Location: Ap1:24709185...24730740
NR annotation: XP_020627018.1, uncharacterized protein LOC110064321 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2377

atgagtaagaagatttacttcactgatttcatctatgagagaattgaagttgcaaatcttgacggcaccttcagaaagacactgtttacaacagatttgtatagcccgcgggggatcgctgtagatgcaaagagtgggtacatgttctggacagactatggatttgattttccaagaatagaacgagcagatttaacgggtgacaatcgaatgattgtggttacgtttggatatgactggtggtatcaattcttccccataagcgtggtcattgactatgagcatgatcccgagcgcattttctggatagatcgcttcaataattacatcgattacgcagacttagatggaaataacaagacaaatttggaatacatcaacgaaaacatacatccagtagatttggcattatatggtgacactctatactgggcggacaggaacagtcacagcattcagtggtttaacaccacgcagtccataggaatgcatttcaacttcggtcatctcacggatgactatctgacaggtgtcgtggtgtctgacaagtcaagacaaccagtcgtttcgccttcgccgtgtggcattaataacggtggatgcagccatctttgcttattggctcccggtggagaaagcaagtgcgcatgcccaaatggagtggagttattacctggaaataagacttgcagtaacgcgacccagccaaaaccgccgccaccacctgtaccagatctaaaagtacgtcttagtggttcgagctcgtcgaacgagggccgtgtggaagtgtattatctaggaaggtggggaacagtctgcaatgatcactggggcttaaaagaagcttcggttctctgtaaaatgctcaacttttccggtgccagccgtgtggattacttcggcgcaggaaacgaatcaatgcccatttggatggataatgtcaagtgtcgcggcgatgagcaaagcatcgctgcatgtcgtcacaggggatgggacaatcatgattgtagccatttcgaggacgcaggagttgtgtgcagaaatgactctattccaccgactgaaggcccgactttagcaccaggaccgcatccagagttaaaggttcgtctacgttctggaacgacgtcaaatcaaggacgagtggaactgtatcttaatggtacatggggaacgatatgtgacgactactggggaatccaggaagcaaacgtcgtttgtcgcatgctgggtttcacagaaggtgcttggagtacacactgttgtggctggtacgacggattcactgcaccgaaccaaatttggcttgacgatgtccactgtgtcggcgatgaactcagcatcgcggagtgtcgtcacggcggatggggaagtcacaactgccggcatagtgaagatgtgggagtagtctgcaaatatacaccagtaacactgccagatcaaaaattgagactggctgatgggataagaggaggtgaaggtagagtagagatatttcacgatggccactggggtacagtttgtgacgactattgggacataaaggatgcacaagtcgtctgtaaccaactcgggtatcctgaagccattgctgctcccaagtctgcactttttggcgaaggaaatggtcacatatggctgagcgatgttcactgtgaggggaatgaaagttcgattgaagattgtgagcacgcagcatggaatgcaaaccaatactgtttccacttcgaagatgcatcagtcatttgttcgaatgagactggaagtttggatgcagacgatttcttgttgttttgcgaaagtggtcgtaaactgtgctacttcatccctctgcccctggcgtctccagcacagataattccactgaagattgcaatcgattccaccccagcggggatatcctacgatccaatagagaaaagaatttactggacggatctttctggtagcataaatcgagctttcctgcataatagttcacaagaaacagtagtgagaggcattagttatccaatgggtattgaagtagatgttattggaaggaccatctacgtcgccgactattatggtaataacatccgagttgcatctcttgacggcgttaatcaagctgttcttgttgatgtacagtatccacaagggatcgctttggatagtgtttctgggtacatatattattcatcggttggaaacagcctacaaatataccgagcggatatggatggcacaaaccaaatgatcctggcaaatttgtccttcgttggagatgatacgtttgttgacctggttctcgataagtcttacaaccgtctatacttttctgaccaaaccaatgaagtgatacggtatattgacctgggaagtccagatctggagatccacactctgctttctggaaaccttcacaaaccatcaagtctagcgatgttgaacggcatactatactggactgctcctggcgacggatcattttcaggagccgtcttcaaagcaaacgtaacaggtaacagcgctacgactgaaacggtggctgacagctttgggcgaccaaaaggaatatacgcgtacaactcaatggcaactcaaataccagctgtggccgttcgttatattgttagggtcgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgaaattcaaacccgaacgttagccaagaataataacggtggatgtgctcagctctgcgtcttgaaacccaatggccgaacttgcatgtgcggagctggaatgaagactgccgaagatgggatatcttgcacccttagcgacgtcatcattgttaccgatatcgatcacgacaaaatatacttctcagatctatcagaaaacctcctcaatcccctgccgttttcgaatatcgagcgtccaactggtgtggcatttgatccattcgaagatcgcatgtattggactgatcctacacatggtattgtcgcccgcgctaaaatcgatggcacgaaccaggaaaccatccgtttcaatgtcacagccatgggtatcgatttggatcttgtgggaggaaatgtttactggataaacagtggtaacaggacagtcgaagtttcgaagttgaatggagagtattggaaggtgcttgtctctaatctgtcttcagcgcctgtagacattgctttggatacaaccagagggtttatgtattggtcggctgaaggagttatcgaaggagcagaaatggatggaacaaaccgacgtccagttgctgacttgggagagacctggtacggggcccctgtcgatgccaaaggcctagcagtggatgtggaaatgaatcgaatctattttgtaagctacgaagaatattctcttttctacgttgatctcgattctgcaaaccgcactgtccagacactgattcaaaacttctggcttttccttggcccatttggagttgctgtcgatgaccaatacgtgtactggactgaatacatagcttttggatatgtatttcggacaaataagacagcatctgatgatgataatactgaggttgtacttcatgggacgtataacccccgaggaattgcagttaaaaaaggcaaccctacccgagacaatgatcatccgtgccgtaccaacaacggtgattgcactcatctctgtctgacgattccctctgggtatacgtgtggctgcccggcggttgtagatgatggacaagattgttcaacatcaccaattactacaccaccaccaacccaaccaactacaccaacgaccgtaccaaccactgtcgctgttgactactgcacgcctaatccctgtaagaatggagcgacgtgtaaaacgcttggtaacggttacaaatgcgactgtcaggggtactttggtggcgttaactgttccgtagatatatcgactgaagtggttgagctggttcttgaaatgactttggaggagttcaacataacagaattcattaacagcattgtggaagcactcaatgaagaatgtgcgttaaatcctctggcgccagaatgctcaactggtgaaagcactgaatccatcgtcaaacgcgctgtacagggaggtccttatacccctgacgacatctacttgccaacggatccaaaagaggtcgatggtggagtccaggttgagtatgctgtggttaaaacgtcaatggatggtgagcctgtggtggtgccgagtacattcgtcgctgaagtgaccgagaagaaagctgccgagattggacgtaaacttggaggaaatgttaagtccgtaaggcaaaaaccagttgaaaaacctaccgctgcaccacaaaccggaaaatcaaatggcggactaattgctggagttgtagtagctgtgggattagtcgtcattattgctgcctttactgtctggtatttcagagtaaagaagactcgctctgccaatgtaccgtacgtgaaagaagacgacgacgatcgtgcgaaaagccgaacaactgcctttgaaaatcccggattcggtgctgcggaaggctacgacgacatcggtccagtggtcttttctcccttcgaagagaacgtggaagctggcggagtgtccaatccaacttatgctgagataggcatgacaagcatttcgtcttctcagaacatcaacacagccggcgctgctggtgactctgccgcctccgacggtccgcgttatgagggtgtgggtgagctgcccaaaaagacacctcttggcaaggaagaagaggtagagcctgatcacgtggaaatcgttgtccagaaggagaccccggcccaggaagagccgcgatacgagtcgttattcccagaaaagagcaaggaagcaaagaatgaccaaacagaggttgaagttgaaaaggtagatgagcctcgatatgaaacgttgtctgtccgccaggaaattgaccaaacagtgctagttctggaggataacagccaacgcattgcagaatcagaatcttaa

Transcript

evm.model.Ap1.2377

ATGAGTAAGAAGATTTACTTCACTGATTTCATCTATGAGAGAATTGAAGTTGCAAATCTTGACGGCACCTTCAGAAAGACACTGTTTACAACAGATTTGTATAGCCCGCGGGGGATCGCTGTAGATGCAAAGAGTGGGTACATGTTCTGGACAGACTATGGATTTGATTTTCCAAGAATAGAACGAGCAGATTTAACGGGTGACAATCGAATGATTGTGGTTACGTTTGGATATGACTGGTGGTATCAATTCTTCCCCATAAGCGTGGTCATTGACTATGAGCATGATCCCGAGCGCATTTTCTGGATAGATCGCTTCAATAATTACATCGATTACGCAGACTTAGATGGAAATAACAAGACAAATTTGGAATACATCAACGAAAACATACATCCAGTAGATTTGGCATTATATGGTGACACTCTATACTGGGCGGACAGGAACAGTCACAGCATTCAGTGGTTTAACACCACGCAGTCCATAGGAATGCATTTCAACTTCGGTCATCTCACGGATGACTATCTGACAGGTGTCGTGGTGTCTGACAAGTCAAGACAACCAGTCGTTTCGCCTTCGCCGTGTGGCATTAATAACGGTGGATGCAGCCATCTTTGCTTATTGGCTCCCGGTGGAGAAAGCAAGTGCGCATGCCCAAATGGAGTGGAGTTATTACCTGGAAATAAGACTTGCAGTAACGCGACCCAGCCAAAACCGCCGCCACCACCTGTACCAGATCTAAAAGTACGTCTTAGTGGTTCGAGCTCGTCGAACGAGGGCCGTGTGGAAGTGTATTATCTAGGAAGGTGGGGAACAGTCTGCAATGATCACTGGGGCTTAAAAGAAGCTTCGGTTCTCTGTAAAATGCTCAACTTTTCCGGTGCCAGCCGTGTGGATTACTTCGGCGCAGGAAACGAATCAATGCCCATTTGGATGGATAATGTCAAGTGTCGCGGCGATGAGCAAAGCATCGCTGCATGTCGTCACAGGGGATGGGACAATCATGATTGTAGCCATTTCGAGGACGCAGGAGTTGTGTGCAGAAATGACTCTATTCCACCGACTGAAGGCCCGACTTTAGCACCAGGACCGCATCCAGAGTTAAAGGTTCGTCTACGTTCTGGAACGACGTCAAATCAAGGACGAGTGGAACTGTATCTTAATGGTACATGGGGAACGATATGTGACGACTACTGGGGAATCCAGGAAGCAAACGTCGTTTGTCGCATGCTGGGTTTCACAGAAGGTGCTTGGAGTACACACTGTTGTGGCTGGTACGACGGATTCACTGCACCGAACCAAATTTGGCTTGACGATGTCCACTGTGTCGGCGATGAACTCAGCATCGCGGAGTGTCGTCACGGCGGATGGGGAAGTCACAACTGCCGGCATAGTGAAGATGTGGGAGTAGTCTGCAAATATACACCAGTAACACTGCCAGATCAAAAATTGAGACTGGCTGATGGGATAAGAGGAGGTGAAGGTAGAGTAGAGATATTTCACGATGGCCACTGGGGTACAGTTTGTGACGACTATTGGGACATAAAGGATGCACAAGTCGTCTGTAACCAACTCGGGTATCCTGAAGCCATTGCTGCTCCCAAGTCTGCACTTTTTGGCGAAGGAAATGGTCACATATGGCTGAGCGATGTTCACTGTGAGGGGAATGAAAGTTCGATTGAAGATTGTGAGCACGCAGCATGGAATGCAAACCAATACTGTTTCCACTTCGAAGATGCATCAGTCATTTGTTCGAATGAGACTGGAAGTTTGGATGCAGACGATTTCTTGTTGTTTTGCGAAAGTGGTCGTAAACTGTGCTACTTCATCCCTCTGCCCCTGGCGTCTCCAGCACAGATAATTCCACTGAAGATTGCAATCGATTCCACCCCAGCGGGGATATCCTACGATCCAATAGAGAAAAGAATTTACTGGACGGATCTTTCTGGTAGCATAAATCGAGCTTTCCTGCATAATAGTTCACAAGAAACAGTAGTGAGAGGCATTAGTTATCCAATGGGTATTGAAGTAGATGTTATTGGAAGGACCATCTACGTCGCCGACTATTATGGTAATAACATCCGAGTTGCATCTCTTGACGGCGTTAATCAAGCTGTTCTTGTTGATGTACAGTATCCACAAGGGATCGCTTTGGATAGTGTTTCTGGGTACATATATTATTCATCGGTTGGAAACAGCCTACAAATATACCGAGCGGATATGGATGGCACAAACCAAATGATCCTGGCAAATTTGTCCTTCGTTGGAGATGATACGTTTGTTGACCTGGTTCTCGATAAGTCTTACAACCGTCTATACTTTTCTGACCAAACCAATGAAGTGATACGGTATATTGACCTGGGAAGTCCAGATCTGGAGATCCACACTCTGCTTTCTGGAAACCTTCACAAACCATCAAGTCTAGCGATGTTGAACGGCATACTATACTGGACTGCTCCTGGCGACGGATCATTTTCAGGAGCCGTCTTCAAAGCAAACGTAACAGGTAACAGCGCTACGACTGAAACGGTGGCTGACAGCTTTGGGCGACCAAAAGGAATATACGCGTACAACTCAATGGCAACTCAAATACCAGCTGTGGCCGTTCGTTATATTGTTAGGGTCGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAAATTCAAACCCGAACGTTAGCCAAGAATAATAACGGTGGATGTGCTCAGCTCTGCGTCTTGAAACCCAATGGCCGAACTTGCATGTGCGGAGCTGGAATGAAGACTGCCGAAGATGGGATATCTTGCACCCTTAGCGACGTCATCATTGTTACCGATATCGATCACGACAAAATATACTTCTCAGATCTATCAGAAAACCTCCTCAATCCCCTGCCGTTTTCGAATATCGAGCGTCCAACTGGTGTGGCATTTGATCCATTCGAAGATCGCATGTATTGGACTGATCCTACACATGGTATTGTCGCCCGCGCTAAAATCGATGGCACGAACCAGGAAACCATCCGTTTCAATGTCACAGCCATGGGTATCGATTTGGATCTTGTGGGAGGAAATGTTTACTGGATAAACAGTGGTAACAGGACAGTCGAAGTTTCGAAGTTGAATGGAGAGTATTGGAAGGTGCTTGTCTCTAATCTGTCTTCAGCGCCTGTAGACATTGCTTTGGATACAACCAGAGGGTTTATGTATTGGTCGGCTGAAGGAGTTATCGAAGGAGCAGAAATGGATGGAACAAACCGACGTCCAGTTGCTGACTTGGGAGAGACCTGGTACGGGGCCCCTGTCGATGCCAAAGGCCTAGCAGTGGATGTGGAAATGAATCGAATCTATTTTGTAAGCTACGAAGAATATTCTCTTTTCTACGTTGATCTCGATTCTGCAAACCGCACTGTCCAGACACTGATTCAAAACTTCTGGCTTTTCCTTGGCCCATTTGGAGTTGCTGTCGATGACCAATACGTGTACTGGACTGAATACATAGCTTTTGGATATGTATTTCGGACAAATAAGACAGCATCTGATGATGATAATACTGAGGTTGTACTTCATGGGACGTATAACCCCCGAGGAATTGCAGTTAAAAAAGGCAACCCTACCCGAGACAATGATCATCCGTGCCGTACCAACAACGGTGATTGCACTCATCTCTGTCTGACGATTCCCTCTGGGTATACGTGTGGCTGCCCGGCGGTTGTAGATGATGGACAAGATTGTTCAACATCACCAATTACTACACCACCACCAACCCAACCAACTACACCAACGACCGTACCAACCACTGTCGCTGTTGACTACTGCACGCCTAATCCCTGTAAGAATGGAGCGACGTGTAAAACGCTTGGTAACGGTTACAAATGCGACTGTCAGGGGTACTTTGGTGGCGTTAACTGTTCCGTAGATATATCGACTGAAGTGGTTGAGCTGGTTCTTGAAATGACTTTGGAGGAGTTCAACATAACAGAATTCATTAACAGCATTGTGGAAGCACTCAATGAAGAATGTGCGTTAAATCCTCTGGCGCCAGAATGCTCAACTGGTGAAAGCACTGAATCCATCGTCAAACGCGCTGTACAGGGAGGTCCTTATACCCCTGACGACATCTACTTGCCAACGGATCCAAAAGAGGTCGATGGTGGAGTCCAGGTTGAGTATGCTGTGGTTAAAACGTCAATGGATGGTGAGCCTGTGGTGGTGCCGAGTACATTCGTCGCTGAAGTGACCGAGAAGAAAGCTGCCGAGATTGGACGTAAACTTGGAGGAAATGTTAAGTCCGTAAGGCAAAAACCAGTTGAAAAACCTACCGCTGCACCACAAACCGGAAAATCAAATGGCGGACTAATTGCTGGAGTTGTAGTAGCTGTGGGATTAGTCGTCATTATTGCTGCCTTTACTGTCTGGTATTTCAGAGTAAAGAAGACTCGCTCTGCCAATGTACCGTACGTGAAAGAAGACGACGACGATCGTGCGAAAAGCCGAACAACTGCCTTTGAAAATCCCGGATTCGGTGCTGCGGAAGGCTACGACGACATCGGTCCAGTGGTCTTTTCTCCCTTCGAAGAGAACGTGGAAGCTGGCGGAGTGTCCAATCCAACTTATGCTGAGATAGGCATGACAAGCATTTCGTCTTCTCAGAACATCAACACAGCCGGCGCTGCTGGTGACTCTGCCGCCTCCGACGGTCCGCGTTATGAGGGTGTGGGTGAGCTGCCCAAAAAGACACCTCTTGGCAAGGAAGAAGAGGTAGAGCCTGATCACGTGGAAATCGTTGTCCAGAAGGAGACCCCGGCCCAGGAAGAGCCGCGATACGAGTCGTTATTCCCAGAAAAGAGCAAGGAAGCAAAGAATGACCAAACAGAGGTTGAAGTTGAAAAGGTAGATGAGCCTCGATATGAAACGTTGTCTGTCCGCCAGGAAATTGACCAAACAGTGCTAGTTCTGGAGGATAACAGCCAACGCATTGCAGAATCAGAATCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UGM3	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Homo sapiens OX=9606 GN=DMBT1 PE=1 SV=2
Q95218	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Oryctolagus cuniculus OX=9986 GN=Dmbt1 PE=1 SV=2
Q2VLH6	Scavenger receptor cysteine-rich type 1 protein M130 OS=Mus musculus OX=10090 GN=Cd163 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002128 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813 all species →	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20051	LRP4, MEGF7; low-density lipoprotein receptor-related protein 4	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.