Detailed information of evm.model.Ap1.24 in Astrangia poculata

Genomic Location: Ap1:212154...212900
NR annotation: KAJ7388789.1, hypothetical protein OS493_035573 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P22845Histone H1.0-A OS=Xenopus laevis OX=8355 GN=h1-0-a PE=2 SV=3
P22844Histone H1.0-B OS=Xenopus laevis OX=8355 GN=h1-0-b PE=1 SV=1
Q6NVM0Histone H1.0 OS=Xenopus tropicalis OX=8364 GN=h1-0 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000413 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00538
all species →		Linker_histonelinker histone H1 and H5 familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR005818
all species →		DomainLinker histone H1/H5, domain H15Interproscan
IPR005819
all species →		FamilyLinker histone H1/H5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11467
all species →		HISTONE H1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000786
all species →		Cellular ComponentnucleosomeInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006334
all species →		Biological Processnucleosome assemblyInterproscan
GO:0030527
all species →		Molecular Functionstructural constituent of chromatinInterproscan
GO:0003690
all species →		Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0030261
all species →		Biological Processchromosome condensationInterproscan
GO:0031492
all species →		Molecular Functionnucleosomal DNA bindingInterproscan
GO:0045910
all species →		Biological Processnegative regulation of DNA recombinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11275H1_5; histone H1/5-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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