Gene detail

Detailed information of evm.model.Ap1.2439 in Astrangia poculata

Genomic Location: Ap1:25241601...25258950
NR annotation: KAJ7377440.1, hypothetical protein OS493_029343 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2439

atgtctagcttactgcactcccgttggaaatggagagggatgtatcctgcatatcgtgctgcctcgaagatcagaaaattaaggaacgttgattcaagagttctatcgactggccacatctactcaagttcccaggactcaagccgcaaaccgctgaacaaacgtctcaaagaagaagccgaggctgttgtaatcggtggaggagccttgggcaccagtattgcctatcatctggccaaaggcggaatgaaagacgtggtccttctggagaaatctgaactgactgcaggctcaacttggcactcgtttggtgtaacttctcattataaccctgtggtcaacatgaagccgataacgcactacagcatgtgcttatacaaacaacttcaagaggaaacaggccaggacgtagggtttcatatgtgtggtagcgtacgaatatgcacaactcctgagagactggaggaagcaaagtaccagatgcaaagacatggctggcagaaagcaccacagaggctgatcaccacagaggaagttgcacaagtacatccgcttctgaacgtagacgatgtgttgggagctttgtacttccctgaggatggctacattgatccgtattccctgacccaggcccttgctatcggagcgcggatgtatggggccgagttgtacatgcctgctccagtcactgggctcaactacagatctgacggcatgtgggacgtacaaacaccgcacgggacaatcaaagctaagcatgttgtaaatgctgcaggtttccatggtagagagatcggtcgcatgacaggaagagaacttgccttgggcatagtacaccatcagtttgttatcacgggaccaattcccgaggtggctaatttaaagaaagagcttccttttatgagggacttggaaggttcagtttactcccgacaggagaagcaaggaattgggtttggcacatacgaaagtgctgacaagatgagaatgcaagatgactggtgggactctgttcctgagggattcgggaaagaactttttgaaagtgatttggacagaatcagtgattacatgacgtattcgatgaagcgaacacccgtcctggccaatgctgaaataaccagtgttgtttcaggccccatgacgtattcccctgacgctatccccatgcttggtcccgatgcagaggttcctaacatgtggctggccatcgggacgggttacgggattggtctcgcgggaggggtcggtaagtacctatctgattggatgatcgatggagagccgccgtatgatctcattgaatgtgaacccaatcgctatggtaactggaccacaagggaatatgtgttggcgaaggttcgagagacttacggcctaaataatgaaatgcttcatcctaaattagagagatgggctggtcgccctgtcaggaccagtggaatatacaagagactttgtgagcgtggtgcgcagatgggtctccgtgctggctgggaacagccaaactggtttgcacgtcctggagacgatccagggtataaacccagcttccgacgaacaaactggtttgagccagttggtcgagaatgtgacatggtgctgaataaagtcggtatcatagacttgtcaccttatggaaaaattgaagtcaagggaaaggatgcatcgtcgtttatggatatgatcttcgccaatgagttacctaaaatagggcactcaaatataagtcacatgttgaccccaaggggtaaagtgtacgcagaaatggctgtcacctgtatagcgccagatcactattttctggtcactggaagtgcgactgagtttcacgatctcaggtggctgctggaaaaccaacgtaaaggtgattacagtgtcacaatcaagaatgtcactgatgacgttgcttgcctcggcatcgctggacctcactcacgtgatgtactttcaaagctgacgtcatcagacataggtgacgaggagtttccatatctggcgttcaggaacatagaagtcgctggacttcccgtgcaagctagtcgcttctcctttacaggtgaattaggttgggagctatttcacaagacggagcacacagctgacctgtatgaagcgttattgaaagctggtgatgatcatggtatcggagactttggcacgtacgccttaaactcgttgagactagagaaaggatttcgttcttggggctttgagatgaatatgtcaactaacgctgttgaggcagatttgatgtcgtctataaaattaaacaagggtgtcagttttattggacgagatgctctcctgaaactgaacaaggatgactgtgaacgtgtcttgtgtttcctaacggtggatacaactgatgtagaccctgaagggaacgaaactgtttggtatgccaataaggttgtaggatttacttcaagtggttcttacagctaccagcttaagaagagtatgtgttttgcatacttgcctccttctctgactgagctggggtcccgagtggaggtggaaatgttaggaaacaagttccccgcagttgtcgttcagcagccgttatttgatccagaaccaattcgcgcgaagaaatga

Transcript

evm.model.Ap1.2439

ATGTCTAGCTTACTGCACTCCCGTTGGAAATGGAGAGGGATGTATCCTGCATATCGTGCTGCCTCGAAGATCAGAAAATTAAGGAACGTTGATTCAAGAGTTCTATCGACTGGCCACATCTACTCAAGTTCCCAGGACTCAAGCCGCAAACCGCTGAACAAACGTCTCAAAGAAGAAGCCGAGGCTGTTGTAATCGGTGGAGGAGCCTTGGGCACCAGTATTGCCTATCATCTGGCCAAAGGCGGAATGAAAGACGTGGTCCTTCTGGAGAAATCTGAACTGACTGCAGGCTCAACTTGGCACTCGTTTGGTGTAACTTCTCATTATAACCCTGTGGTCAACATGAAGCCGATAACGCACTACAGCATGTGCTTATACAAACAACTTCAAGAGGAAACAGGCCAGGACGTAGGGTTTCATATGTGTGGTAGCGTACGAATATGCACAACTCCTGAGAGACTGGAGGAAGCAAAGTACCAGATGCAAAGACATGGCTGGCAGAAAGCACCACAGAGGCTGATCACCACAGAGGAAGTTGCACAAGTACATCCGCTTCTGAACGTAGACGATGTGTTGGGAGCTTTGTACTTCCCTGAGGATGGCTACATTGATCCGTATTCCCTGACCCAGGCCCTTGCTATCGGAGCGCGGATGTATGGGGCCGAGTTGTACATGCCTGCTCCAGTCACTGGGCTCAACTACAGATCTGACGGCATGTGGGACGTACAAACACCGCACGGGACAATCAAAGCTAAGCATGTTGTAAATGCTGCAGGTTTCCATGGTAGAGAGATCGGTCGCATGACAGGAAGAGAACTTGCCTTGGGCATAGTACACCATCAGTTTGTTATCACGGGACCAATTCCCGAGGTGGCTAATTTAAAGAAAGAGCTTCCTTTTATGAGGGACTTGGAAGGTTCAGTTTACTCCCGACAGGAGAAGCAAGGAATTGGGTTTGGCACATACGAAAGTGCTGACAAGATGAGAATGCAAGATGACTGGTGGGACTCTGTTCCTGAGGGATTCGGGAAAGAACTTTTTGAAAGTGATTTGGACAGAATCAGTGATTACATGACGTATTCGATGAAGCGAACACCCGTCCTGGCCAATGCTGAAATAACCAGTGTTGTTTCAGGCCCCATGACGTATTCCCCTGACGCTATCCCCATGCTTGGTCCCGATGCAGAGGTTCCTAACATGTGGCTGGCCATCGGGACGGGTTACGGGATTGGTCTCGCGGGAGGGGTCGGTAAGTACCTATCTGATTGGATGATCGATGGAGAGCCGCCGTATGATCTCATTGAATGTGAACCCAATCGCTATGGTAACTGGACCACAAGGGAATATGTGTTGGCGAAGGTTCGAGAGACTTACGGCCTAAATAATGAAATGCTTCATCCTAAATTAGAGAGATGGGCTGGTCGCCCTGTCAGGACCAGTGGAATATACAAGAGACTTTGTGAGCGTGGTGCGCAGATGGGTCTCCGTGCTGGCTGGGAACAGCCAAACTGGTTTGCACGTCCTGGAGACGATCCAGGGTATAAACCCAGCTTCCGACGAACAAACTGGTTTGAGCCAGTTGGTCGAGAATGTGACATGGTGCTGAATAAAGTCGGTATCATAGACTTGTCACCTTATGGAAAAATTGAAGTCAAGGGAAAGGATGCATCGTCGTTTATGGATATGATCTTCGCCAATGAGTTACCTAAAATAGGGCACTCAAATATAAGTCACATGTTGACCCCAAGGGGTAAAGTGTACGCAGAAATGGCTGTCACCTGTATAGCGCCAGATCACTATTTTCTGGTCACTGGAAGTGCGACTGAGTTTCACGATCTCAGGTGGCTGCTGGAAAACCAACGTAAAGGTGATTACAGTGTCACAATCAAGAATGTCACTGATGACGTTGCTTGCCTCGGCATCGCTGGACCTCACTCACGTGATGTACTTTCAAAGCTGACGTCATCAGACATAGGTGACGAGGAGTTTCCATATCTGGCGTTCAGGAACATAGAAGTCGCTGGACTTCCCGTGCAAGCTAGTCGCTTCTCCTTTACAGGTGAATTAGGTTGGGAGCTATTTCACAAGACGGAGCACACAGCTGACCTGTATGAAGCGTTATTGAAAGCTGGTGATGATCATGGTATCGGAGACTTTGGCACGTACGCCTTAAACTCGTTGAGACTAGAGAAAGGATTTCGTTCTTGGGGCTTTGAGATGAATATGTCAACTAACGCTGTTGAGGCAGATTTGATGTCGTCTATAAAATTAAACAAGGGTGTCAGTTTTATTGGACGAGATGCTCTCCTGAAACTGAACAAGGATGACTGTGAACGTGTCTTGTGTTTCCTAACGGTGGATACAACTGATGTAGACCCTGAAGGGAACGAAACTGTTTGGTATGCCAATAAGGTTGTAGGATTTACTTCAAGTGGTTCTTACAGCTACCAGCTTAAGAAGAGTATGTGTTTTGCATACTTGCCTCCTTCTCTGACTGAGCTGGGGTCCCGAGTGGAGGTGGAAATGTTAGGAAACAAGTTCCCCGCAGTTGTCGTTCAGCAGCCGTTATTTGATCCAGAACCAATTCGCGCGAAGAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DBT9	Dimethylglycine dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Dmgdh PE=1 SV=1
Q9UI17	Dimethylglycine dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=DMGDH PE=1 SV=2
Q63342	Dimethylglycine dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Dmgdh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002587 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16350 all species →	FAO_M	FAD dependent oxidoreductase central domain	Family	Interproscan
PF08669 all species →	GCV_T_C	Glycine cleavage T-protein C-terminal barrel domain	Domain	Interproscan
PF01571 all species →	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan
PF01266 all species →	DAO	FAD dependent oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032503 all species →	Domain	FAD dependent oxidoreductase, central domain	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR013977 all species →	Domain	Glycine cleavage T-protein, C-terminal barrel domain	Interproscan
IPR029043 all species →	Homologous_superfamily	Glycine cleavage T-protein/YgfZ, C-terminal	Interproscan
IPR028896 all species →	Family	Aminomethyltransferase-like	Interproscan
IPR027266 all species →	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR006222 all species →	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR006076 all species →	Domain	FAD dependent oxidoreductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43757 all species →	AMINOMETHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.2439.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.