Genomic Location: Ap1:25599765...25621352
NR annotation: KAJ7385239.1, FYVE, RhoGEF and PH domain-containing protein 6 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.2486 |
| Transcript |
| evm.model.Ap1.2486 |
| Protein |
| evm.model.Ap1.2486 |
| UniProt accession | Description |
|---|---|
| Q9BQ24 | Zinc finger FYVE domain-containing protein 21 OS=Homo sapiens OX=9606 GN=ZFYVE21 PE=1 SV=1 |
| Q8VCM3 | Zinc finger FYVE domain-containing protein 21 OS=Mus musculus OX=10090 GN=Zfyve21 PE=1 SV=2 |
| D3ZVP7 | Zinc finger FYVE domain-containing protein 21 OS=Rattus norvegicus OX=10116 GN=Zfyve21 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008789 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11979 all species → | SARA_C | Smad anchor for receptor activation-like, C-terminal | Domain | Interproscan |
| PF01363 all species → | FYVE | FYVE zinc finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022557 all species → | Domain | Smad anchor for receptor activation-like, C-terminal | Interproscan |
| IPR000306 all species → | Domain | FYVE zinc finger | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR017455 all species → | Domain | Zinc finger, FYVE-related | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46319 all species → | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016197 all species → | Biological Process | endosomal transport | Interproscan |
| GO:0031901 all species → | Cellular Component | early endosome membrane | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
evm.model.Ap1.2486.Transcript abundance of evm.model.Ap1.2486 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
