Detailed information of evm.model.Ap1.2516 in Astrangia poculata

Genomic Location: Ap1:25978931...25980840
NR annotation: XP_020626996.1, lysM and putative peptidoglycan-binding domain-containing protein 4-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P606LysM and putative peptidoglycan-binding domain-containing protein 4 OS=Danio rerio OX=7955 GN=lysmd4 PE=2 SV=2
Q5M836LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Lysmd3 PE=2 SV=1
Q99LE3LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Mus musculus OX=10090 GN=Lysmd3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008427 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01476
all species →		LysMLysM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036779
all species →		Homologous_superfamilyLysM domain superfamilyInterproscan
IPR045030
all species →		FamilyLysM and putative peptidoglycan-binding domain-containing protein 1-4Interproscan
IPR018392
all species →		DomainLysM domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20932
all species →		LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap1.2516. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.2516.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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