Gene detail

Detailed information of evm.model.Ap1.2548 in Astrangia poculata

Genomic Location: Ap1:26222770...26240359
NR annotation: XP_020627001.1, uncharacterized protein LOC110064306 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2548

atggctaaagaggtgcctcaattagtaaagtcatcgttgaggtccgtcttgctatcgagcattaagggaatcaagcaaacaagcatcgagaaagactatcagaagttgacgttctcgagacttgacgtcaaaaaatatggcttccaagacttgtatgaatttttgctagcgatccctgacgttgcaagactggaatattctgttaaggatggagagaataaagtattcggcgttggtgaaaagggtgtttatatgtccgatcatgcaaagaaagctgagggaattccaaatggactcagacctttaccgccttcggaatggccgagaaacaaggccagaaaagagcgaacagttgcggtggataagacttttttgaaagttgcagtagagtcagacgataaaaggaagattgtgcctaaccccagaggactgtacacactttatgttaagaatatacctccaaactgccaagaaattgaaataagtcgtgtcttcaagcagtttccaagtttaaaagaagtgaagattgaaacttctcttagagcggcatttgtgaggttttccactcatgcagatgctgtacgagcccttagtgacatggatggttacagtttacggggtgtcatattgtcagttaatccaggtgtggagcgcactgctcagcaaaatgcaaaagttagtcaggacaaaaaggaagatccaaaaggggatagagccaaaaagaacaaaactacagtaacggttaatggctttgcggataataggactgtcgttaaagaagtcaaaccaggaagtagtaagaacagtgctttatcatcaccaaaagaaagcaaaacagaaagctgggaaacagatggtgggttgtctccaaagacacagactgtggaaaacaaaaagttctttaatcaagacaattatggtgattgtataaaagcagaaggtggcagctatcctatccatgttagcaattttcctgtgggaacaacacaggaaacacttagaaagctgtttagctcgtgtggaaacattgctcagattacgttgaaagaaaagtttgctttcatttattttaccaaacaagaaggagctgtaactgccttgcaaaagatgccacaaacaattaagttaggtgataaaattctcacagtgacccccaaaacacctaaagtgaggtcctcttcactacatcgtcactctaagaaacaagataatgtaccagtgaggtcttcttcactacatcgtcgttctagtcagagttccgtctctagcaatgactccacgacaccgcagtcacctacaagtcccaacatttgtagttcaggggacaacattaatggacaaacgcatacaaaggacaataatagtgacttaactgctagtgaatacagaggatcatttgagagtaatactggacaaaagaaagggagttttagcaatgtaacagacacttctagtggcatgcatgcatgtaaagaagaaggaaaactgaaagacagtaaaactgcaagttgttctcctaaagctgttacagaaaacggaagtgccagtttggatgacaagccacatctttctcttggtatgaaacaaaaagctcctccagtacacctgcttttaacctacgcagaaatgtgtgaacttttcaagaggtgcaacaaacccatgaggacttcagataacattggagctcaggaatttgagattctcgtgactgatgttgttgactcgtgtcatttctgggctaacatcgacgatctgagaggaagttacaaggaactgcagcaaatccgagctgaccttcagattgtagaacatcatgagcggtgtatgccacttaagtatcaactgggtgctgcattgttttcagaggattcactgtggtacagatgctggtgtttggaagtgtctaatataaaaaagaaggaagctaaaatgttttacattgattatggtaactgtgaatggatttcatgggaccggtttactgacatacataagagattttggaatcttgctccacaagcagcgctgttcaagctagcaggtcttgaaaatgcaagtgtatcacctgagatattgagtgaaggaagaaaatacttaaatgctttgattattaacaaagtgtgcagggcaaggatttcccagtcatcagaccccagtgagcctcatgtttttgaggtggaactgactttcgaacttgacaatggagacataatagatgtgaataaacagatggcccttacacgatatgtgcaagagacaagaaaggtatcccatgcaacacagggaccaggccagaatcactccgttgaagaattgcatcaaacaccgggctctcagcaacaagcaactgtggttcaaccacaacagccagcaaaacagatttcacctcagccctctggcaacactcagaatgcacagggaccccaggcagctggacagcatgtgcgatggtcagtagatcaggccatcctgccaagtaaacaagcggagcattcccggcaaccttcagaaagtagccaggcaaattctcggaaaactcaggctgttcagtcaccacagaatgtgcaagctagccagcagtccttgccaaaccaaaaaatggaaccagtggaaaaatcactaacggcgatattgcaagaactgcctagctacatgtaccagttatttgacaaaaaagaagttattgaagttttactctcgtatgtagtttcccctgacgaaatttacttcttttcggctgacaaaaagactcaagaaagtctacaagtaatggcgtggacattgctgaatgaggccaaacctacaacacagatcatctaccccagagttggtgatattgtggccaaagttcatgaaaatcaaattggtgaacaaaaaacgcaccgggttagaataaagtctatccttaaaagtacagctataggagtagagaaggtggttgttcagaatatcgactatgggtggactgagacagtgcaactgagttccttgtatgaacttcctccgaatttaaaacaactgccaccacaagtgatgcaggctaagttggcaggaatacaaaaaaagtcagggctgtcattttatccagagctggttaaatccaagttagttgctgtgaaaactaggagaaagcctgtgcaagtgtcagttgtaaagcgccaagaaggtgtactccaggttgaactttttgaatctgaaggcccaagtctaaatcttcagttgttaaaaatggatgctggtgttgagtttgatgaatcactgcggcctttgttgtgtttccctacatcaactggcgcggacagctctggtttgtcacaaaaccaaacatccagcaatctccctgttaaaactaatcaaaatccaagatggcaccgacaagagaaaagactggattcccgtcccattgatgtccagtcaaaccactcagattgggaagaatgcttgatagatgtagatacagactggatgcaagctacccctgtaacaggggctcaggaaggtgcaagtgaaagacaatctcaggaccctctgtacatgccgccaccacctgcaatgcactccccttcatcagctggatcagcaaatactgtgccccttggccaacatcctgcttctgcagcagtatcagggaggagtgtcccctctgatatacgcccaagttctttctcaggagtagcaagccgcacaccccttgacctacaccccccttcatcagcatcagcatcaacaagtagtgtaccagctagcacacgactcccttcctctggagggacagtgaatagtgtgtcccatgacagacacctttcttcagcaccagcgtcatcatcagaaccttcctcaggagggtcaatgagtagtctgccccatgacatgcaccgcccttcttcatcaggatctgagagcagtaatgtgaattcgcacacaaacttaaaaggcttgtcaagtgctgtgcagaagctgagtttgactgaaactgaaaatagaactgctctaaatggagaacaaaaaaccttacaggacataaggttggcacagaactctttagaaaaagaactagcagaacaggaaggttcccaggactggcagcaggctaaaaaggaactgattcagaaagatgaagagctgaaaaggatcttagacatgccacgttctgagatgaagaagatgataagtttaagacaggaaaaggataagctggagagaaaaatcaggataaaaggacttgaaaaccaaattttgaaactccaaaaggaactaaaacaactggaactggaaaaagaagaacttgcaggggagatgagttag

Transcript

evm.model.Ap1.2548

ATTTTATGGATTGCAATGGCTAAAGAGGTGCCTCAATTAGTAAAGTCATCGTTGAGGTCCGTCTTGCTATCGAGCATTAAGGGAATCAAGCAAACAAGCATCGAGAAAGACTATCAGAAGTTGACGTTCTCGAGACTTGACGTCAAAAAATATGGCTTCCAAGACTTGTATGAATTTTTGCTAGCGATCCCTGACGTTGCAAGACTGGAATATTCTGTTAAGGATGGAGAGAATAAAGTATTCGGCGTTGGTGAAAAGGGTGTTTATATGTCCGATCATGCAAAGAAAGCTGAGGGAATTCCAAATGGACTCAGACCTTTACCGCCTTCGGAATGGCCGAGAAACAAGGCCAGAAAAGAGCGAACAGTTGCGGTGGATAAGACTTTTTTGAAAGTTGCAGTAGAGTCAGACGATAAAAGGAAGATTGTGCCTAACCCCAGAGGACTGTACACACTTTATGTTAAGAATATACCTCCAAACTGCCAAGAAATTGAAATAAGTCGTGTCTTCAAGCAGTTTCCAAGTTTAAAAGAAGTGAAGATTGAAACTTCTCTTAGAGCGGCATTTGTGAGGTTTTCCACTCATGCAGATGCTGTACGAGCCCTTAGTGACATGGATGGTTACAGTTTACGGGGTGTCATATTGTCAGTTAATCCAGGTGTGGAGCGCACTGCTCAGCAAAATGCAAAAGTTAGTCAGGACAAAAAGGAAGATCCAAAAGGGGATAGAGCCAAAAAGAACAAAACTACAGTAACGGTTAATGGCTTTGCGGATAATAGGACTGTCGTTAAAGAAGTCAAACCAGGAAGTAGTAAGAACAGTGCTTTATCATCACCAAAAGAAAGCAAAACAGAAAGCTGGGAAACAGATGGTGGGTTGTCTCCAAAGACACAGACTGTGGAAAACAAAAAGTTCTTTAATCAAGACAATTATGGTGATTGTATAAAAGCAGAAGGTGGCAGCTATCCTATCCATGTTAGCAATTTTCCTGTGGGAACAACACAGGAAACACTTAGAAAGCTGTTTAGCTCGTGTGGAAACATTGCTCAGATTACGTTGAAAGAAAAGTTTGCTTTCATTTATTTTACCAAACAAGAAGGAGCTGTAACTGCCTTGCAAAAGATGCCACAAACAATTAAGTTAGGTGATAAAATTCTCACAGTGACCCCCAAAACACCTAAAGTGAGGTCCTCTTCACTACATCGTCACTCTAAGAAACAAGATAATGTACCAGTGAGGTCTTCTTCACTACATCGTCGTTCTAGTCAGAGTTCCGTCTCTAGCAATGACTCCACGACACCGCAGTCACCTACAAGTCCCAACATTTGTAGTTCAGGGGACAACATTAATGGACAAACGCATACAAAGGACAATAATAGTGACTTAACTGCTAGTGAATACAGAGGATCATTTGAGAGTAATACTGGACAAAAGAAAGGGAGTTTTAGCAATGTAACAGACACTTCTAGTGGCATGCATGCATGTAAAGAAGAAGGAAAACTGAAAGACAGTAAAACTGCAAGTTGTTCTCCTAAAGCTGTTACAGAAAACGGAAGTGCCAGTTTGGATGACAAGCCACATCTTTCTCTTGGTATGAAACAAAAAGCTCCTCCAGTACACCTGCTTTTAACCTACGCAGAAATGTGTGAACTTTTCAAGAGGTGCAACAAACCCATGAGGACTTCAGATAACATTGGAGCTCAGGAATTTGAGATTCTCGTGACTGATGTTGTTGACTCGTGTCATTTCTGGGCTAACATCGACGATCTGAGAGGAAGTTACAAGGAACTGCAGCAAATCCGAGCTGACCTTCAGATTGTAGAACATCATGAGCGGTGTATGCCACTTAAGTATCAACTGGGTGCTGCATTGTTTTCAGAGGATTCACTGTGGTACAGATGCTGGTGTTTGGAAGTGTCTAATATAAAAAAGAAGGAAGCTAAAATGTTTTACATTGATTATGGTAACTGTGAATGGATTTCATGGGACCGGTTTACTGACATACATAAGAGATTTTGGAATCTTGCTCCACAAGCAGCGCTGTTCAAGCTAGCAGGTCTTGAAAATGCAAGTGTATCACCTGAGATATTGAGTGAAGGAAGAAAATACTTAAATGCTTTGATTATTAACAAAGTGTGCAGGGCAAGGATTTCCCAGTCATCAGACCCCAGTGAGCCTCATGTTTTTGAGGTGGAACTGACTTTCGAACTTGACAATGGAGACATAATAGATGTGAATAAACAGATGGCCCTTACACGATATGTGCAAGAGACAAGAAAGGTATCCCATGCAACACAGGGACCAGGCCAGAATCACTCCGTTGAAGAATTGCATCAAACACCGGGCTCTCAGCAACAAGCAACTGTGGTTCAACCACAACAGCCAGCAAAACAGATTTCACCTCAGCCCTCTGGCAACACTCAGAATGCACAGGGACCCCAGGCAGCTGGACAGCATGTGCGATGGTCAGTAGATCAGGCCATCCTGCCAAGTAAACAAGCGGAGCATTCCCGGCAACCTTCAGAAAGTAGCCAGGCAAATTCTCGGAAAACTCAGGCTGTTCAGTCACCACAGAATGTGCAAGCTAGCCAGCAGTCCTTGCCAAACCAAAAAATGGAACCAGTGGAAAAATCACTAACGGCGATATTGCAAGAACTGCCTAGCTACATGTACCAGTTATTTGACAAAAAAGAAGTTATTGAAGTTTTACTCTCGTATGTAGTTTCCCCTGACGAAATTTACTTCTTTTCGGCTGACAAAAAGACTCAAGAAAGTCTACAAGTAATGGCGTGGACATTGCTGAATGAGGCCAAACCTACAACACAGATCATCTACCCCAGAGTTGGTGATATTGTGGCCAAAGTTCATGAAAATCAAATTGGTGAACAAAAAACGCACCGGGTTAGAATAAAGTCTATCCTTAAAAGTACAGCTATAGGAGTAGAGAAGGTGGTTGTTCAGAATATCGACTATGGGTGGACTGAGACAGTGCAACTGAGTTCCTTGTATGAACTTCCTCCGAATTTAAAACAACTGCCACCACAAGTGATGCAGGCTAAGTTGGCAGGAATACAAAAAAAGTCAGGGCTGTCATTTTATCCAGAGCTGGTTAAATCCAAGTTAGTTGCTGTGAAAACTAGGAGAAAGCCTGTGCAAGTGTCAGTTGTAAAGCGCCAAGAAGGTGTACTCCAGGTTGAACTTTTTGAATCTGAAGGCCCAAGTCTAAATCTTCAGTTGTTAAAAATGGATGCTGGTGTTGAGTTTGATGAATCACTGCGGCCTTTGTTGTGTTTCCCTACATCAACTGGCGCGGACAGCTCTGGTTTGTCACAAAACCAAACATCCAGCAATCTCCCTGTTAAAACTAATCAAAATCCAAGATGGCACCGACAAGAGAAAAGACTGGATTCCCGTCCCATTGATGTCCAGTCAAACCACTCAGATTGGGAAGAATGCTTGATAGATGTAGATACAGACTGGATGCAAGCTACCCCTGTAACAGGGGCTCAGGAAGGTGCAAGTGAAAGACAATCTCAGGACCCTCTGTACATGCCGCCACCACCTGCAATGCACTCCCCTTCATCAGCTGGATCAGCAAATACTGTGCCCCTTGGCCAACATCCTGCTTCTGCAGCAGTATCAGGGAGGAGTGTCCCCTCTGATATACGCCCAAGTTCTTTCTCAGGAGTAGCAAGCCGCACACCCCTTGACCTACACCCCCCTTCATCAGCATCAGCATCAACAAGTAGTGTACCAGCTAGCACACGACTCCCTTCCTCTGGAGGGACAGTGAATAGTGTGTCCCATGACAGACACCTTTCTTCAGCACCAGCGTCATCATCAGAACCTTCCTCAGGAGGGTCAATGAGTAGTCTGCCCCATGACATGCACCGCCCTTCTTCATCAGGATCTGAGAGCAGTAATGTGAATTCGCACACAAACTTAAAAGGCTTGTCAAGTGCTGTGCAGAAGCTGAGTTTGACTGAAACTGAAAATAGAACTGCTCTAAATGGAGAACAAAAAACCTTACAGGACATAAGGTTGGCACAGAACTCTTTAGAAAAAGAACTAGCAGAACAGGAAGGTTCCCAGGACTGGCAGCAGGCTAAAAAGGAACTGATTCAGAAAGATGAAGAGCTGAAAAGGATCTTAGACATGCCACGTTCTGAGATGAAGAAGATGATAAGTTTAAGACAGGAAAAGGATAAGCTGGAGAGAAAAATCAGGATAAAAGGACTTGAAAACCAAATTTTGAAACTCCAAAAGGAACTAAAACAACTGGAACTGGAAAAAGAAGAACTTGCAGGGGAGATGAGTTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003787 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF12872 all species →	OST-HTH	OST-HTH/LOTUS domain	Domain	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR050374 all species →	Family	RRT5/SRSF/Splicing Factor SR	Interproscan
IPR025605 all species →	Domain	OST-HTH/LOTUS domain	Interproscan
IPR041966 all species →	Homologous_superfamily	LOTUS-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23003 all species →	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.2548.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.