Gene detail

Detailed information of evm.model.Ap1.2584 in Astrangia poculata

Genomic Location: Ap1:26476838...26490056
NR annotation: KAJ7385326.1, hypothetical protein OS493_016402 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2584

atgattacaacagcgacgcaagaggtagccgtgactattactcctcgaaacagagccaactttcgaaggctcaaaactaacagcatacaaagtgtgaagcgatgggaaaaagaaaacgagcttctttacgccatgatggaagacgagagcgaatggctagccaagttatttcccgacgtggttatctctccggagtttttcttctacgctttggaagatggctcgttactctgtcgacttgcgaactacattcaagagaaagcggagaagtactctcgggagcaaaacgtcccggtgcctggaaagaaatttcgctatcacacaatgagcaagtgcggcagagagatcaaactttttcggtcccgggaaaatgtgcaacaatttctcacatggtgtcgaagtcacggtattcccgaagccattctgttcgaatcgaacgatgttgtggaagttgatgattaccgagagggttgcagaggtgtcattatttgtctaatggagattgtcagaaagacatcgaagtttgatcttgacgagctgccgcagttaattcaaatggagaaagaaatcgaggaggacgaagcgctgggcgacacggaaccgaacgagcaggggcaaattctggatgtggagaaaataaacatgactgaaattgacaaccttgaagttcaacaaacagatcagccagaaattcaaagccctagctcgctggattcggattctggggtcgactctgtgtttgatctagatgaaggggaaaattcggctgctcgtcttacggaattttctgtggaagaagccgaggatataaagaaaaccacagtcgtgcaaagaaaacaaactccaccgaaaccaaaagatcaaaaaagttctccaaagagtcggcctaaaacaaaagaacttccttctctactggacagcactgggccaaaatctgaattagataaacaggtgtgcaagattgctcaagactataacataaaaattgttcatcgtctgaaagaaggaaagtacatcattcttggccgagttatgtttgttcggatgttaaatgaccacatgttggtacgtattggtggaggatgggatacattggaacactacataatgactcatgtaccctctaagcaagcactcgacaattcaagtgttccaagtcctcaagctcttgccagccctcgaaactccatatcggcgggcactgggaccaggagtagcctgtttgaaaagtttaaaaggaaagaacagattggagttatcagagactcgccagtttattcatcgcaaggaagcttgagccagctatctgcaactcaatcctcgcctaagaaaaagttatcagtagctgaaggcgacgagaaggacatcacagacgcaatccgtaaaatatcgtcttcggtgtcagagaatttagctacaagacccgccagcttcactagcaaggcttttcaccagcttaaaagtcgtttcgacaagggaattttcgggacgagtaggagaacgtcatcccctgacctcacgttaaaaggcaaaaaaatttcaaggcgtttgagtgatacttgtactatggcggacattgcttcatctcttgcatttgacggagcagcgaacgaagaacaaaagcaagctgcaaatgcaaataacaatgattccgaatcaaaacaacccgagtctggggaaactgaagacgcggtagtgggaaaggtaacggcgccaactgaagacttacttggagacgagactttgcagaaacccgttgcctcggacgcgattgacggttctgcaccaagcggagatttacccaccacggatcacgcaaatggctctaattggtttgaggatttgttaggtggtgcagtgaatgggaccgaaaattaccaggctgtgcctcgtgaggagaatcttgtcgatatttcgtcgtttgatccttttgctgcaccgtctggccagggcgaacttatttcgatcgacagcgcatcttcggagaaaatcgatgagcagccgaagatcacggatcacgggtttgaacagtttacaactgagtctgaagaaagtgaggtaatttcaacgcctcggattgaccttggagatctcctagcggactcagaatcggcagaaactaagaaacaagaaaatgtggtggagtcttcaccgccggttacttttgaagagttacaaccggaaaaagattcgagcgaaacccaagcagaaggaaatttgatcgagtcttcacctgcgactgtagaagaacacgcagcaccggaagcccagtcggtagaagaagtcaaacctgatgaacctgttgtgagtgagaacgtccaaaacgttcctaccattgcagtagatcctgttgttgaacccgtttccagcgaggaagctgtgaagtctgaaggagaaagtactaaagctgctactgtgtcggacgagacttctacgcaggaacagagtaaagaaggagttgtcgagagcgtcccagtgaatgtggacgaagagaccaaggctgtcgaggtagaagctaaacctgtcgaggaagaacccatgcctgcagaggaggaagctaagcctatagagccagaagctaagcacgtagaggaaggacccaaacctgtggaggacgaagccaaacctgtggaaccagtagccaagcctgtagaggaaaaagttaagccggcagaggcagaagttaagccttcaaagggacaggctcctaaaacagaaaaacctgctgaaaagggcacgaaaacaaagccacacacagctggtgcaagacctaagtctcctcctaaagcagccccggcggcaagaacaacggcagccaaaaaaccaacaggacctgcaaggacgacttcacctacaaaggcgccaacctctgcggcgacgaaaaaagacgtcagagctccagcgaccaaagcacctgctactaaaacaccagctaccaagcctgctgctcctaaagtgccagccacgaagacaacaacctcagcggctcctggtgcaaagaaacccgctactaaaccttcagttgcgaagacagacgaagcaaagaaaccagagaagcccaagagtgctgcaacaactcgccctccgacgaaaaccgcgggtaccagtgcctccggtgcggctcgacctgctagtgcggctcccaagaagcctccggcctcttcctcgagacctgctgccgctaagccccctggtaaagacgtgaaggacgctggtcctccaaaaagcgcgccaaagacaacagcttcgaaaccagcatccgccaaaccaacgccttcgaggacaagcgctcctgcaacaaagcctgctgcacctaaaccaagccgaactcagagtgcaaagcccagtgacaaaacagacggtgcagctaagcaacctacttcacggccgctaagtgcgaagccaaaaccgacggctacgacaacgaccgtaaaaaagacaacaacgaccgttaccactaagactggtgccggccctgcaaggaccactaccacgaaaacggcgacacaagctaagaccggtcaagggaaaactactacaacaaccactaagaaagaaacgacaaggcctgcctcggctgctaaaactactactggtgccaagcccgcggtcactggtcccaaatcggctaaacctggcgcgaaaccgtccacgaaagcagcacctaagaaaaaagtggaagagcctgcaaaaggaaaggaggaggtcaaacaggacgagaaaccagcatctcaaccggagaaggtcgacgaacccgtggcgcctgtgacggacgagaagcctcctgaagttgccgagattgcacctgaagagaagcctgccgaagctgtcgaagtggtttctgaagaacgtccagtcgaagcaagtcccgaagagaaattgatcgaattaacgcccgaatcagccccagccgaacaagctgccgaaccaggcgaagtccctccggaaggcgtcgaacaatcgaatgtcgtcacaaagatcgtcacgagcgaaacgacgactatcatcgcagatggcgacgaacaatcgactaccacaacagaagaaacgacatttgaacagacggttggagaaagctaa

Transcript

evm.model.Ap1.2584

ATGATTACAACAGCGACGCAAGAGGTAGCCGTGACTATTACTCCTCGAAACAGAGCCAACTTTCGAAGGCTCAAAACTAACAGCATACAAAGTGTGAAGCGATGGGAAAAAGAAAACGAGCTTCTTTACGCCATGATGGAAGACGAGAGCGAATGGCTAGCCAAGTTATTTCCCGACGTGGTTATCTCTCCGGAGTTTTTCTTCTACGCTTTGGAAGATGGCTCGTTACTCTGTCGACTTGCGAACTACATTCAAGAGAAAGCGGAGAAGTACTCTCGGGAGCAAAACGTCCCGGTGCCTGGAAAGAAATTTCGCTATCACACAATGAGCAAGTGCGGCAGAGAGATCAAACTTTTTCGGTCCCGGGAAAATGTGCAACAATTTCTCACATGGTGTCGAAGTCACGGTATTCCCGAAGCCATTCTGTTCGAATCGAACGATGTTGTGGAAGTTGATGATTACCGAGAGGGTTGCAGAGGTGTCATTATTTGTCTAATGGAGATTGTCAGAAAGACATCGAAGTTTGATCTTGACGAGCTGCCGCAGTTAATTCAAATGGAGAAAGAAATCGAGGAGGACGAAGCGCTGGGCGACACGGAACCGAACGAGCAGGGGCAAATTCTGGATGTGGAGAAAATAAACATGACTGAAATTGACAACCTTGAAGTTCAACAAACAGATCAGCCAGAAATTCAAAGCCCTAGCTCGCTGGATTCGGATTCTGGGGTCGACTCTGTGTTTGATCTAGATGAAGGGGAAAATTCGGCTGCTCGTCTTACGGAATTTTCTGTGGAAGAAGCCGAGGATATAAAGAAAACCACAGTCGTGCAAAGAAAACAAACTCCACCGAAACCAAAAGATCAAAAAAGTTCTCCAAAGAGTCGGCCTAAAACAAAAGAACTTCCTTCTCTACTGGACAGCACTGGGCCAAAATCTGAATTAGATAAACAGGTGTGCAAGATTGCTCAAGACTATAACATAAAAATTGTTCATCGTCTGAAAGAAGGAAAGTACATCATTCTTGGCCGAGTTATGTTTGTTCGGATGTTAAATGACCACATGTTGGTACGTATTGGTGGAGGATGGGATACATTGGAACACTACATAATGACTCATGTACCCTCTAAGCAAGCACTCGACAATTCAAGTGTTCCAAGTCCTCAAGCTCTTGCCAGCCCTCGAAACTCCATATCGGCGGGCACTGGGACCAGGAGTAGCCTGTTTGAAAAGTTTAAAAGGAAAGAACAGATTGGAGTTATCAGAGACTCGCCAGTTTATTCATCGCAAGGAAGCTTGAGCCAGCTATCTGCAACTCAATCCTCGCCTAAGAAAAAGTTATCAGTAGCTGAAGGCGACGAGAAGGACATCACAGACGCAATCCGTAAAATATCGTCTTCGGTGTCAGAGAATTTAGCTACAAGACCCGCCAGCTTCACTAGCAAGGCTTTTCACCAGCTTAAAAGTCGTTTCGACAAGGGAATTTTCGGGACGAGTAGGAGAACGTCATCCCCTGACCTCACGTTAAAAGGCAAAAAAATTTCAAGGCGTTTGAGTGATACTTGTACTATGGCGGACATTGCTTCATCTCTTGCATTTGACGGAGCAGCGAACGAAGAACAAAAGCAAGCTGCAAATGCAAATAACAATGATTCCGAATCAAAACAACCCGAGTCTGGGGAAACTGAAGACGCGGTAGTGGGAAAGGTAACGGCGCCAACTGAAGACTTACTTGGAGACGAGACTTTGCAGAAACCCGTTGCCTCGGACGCGATTGACGGTTCTGCACCAAGCGGAGATTTACCCACCACGGATCACGCAAATGGCTCTAATTGGTTTGAGGATTTGTTAGGTGGTGCAGTGAATGGGACCGAAAATTACCAGGCTGTGCCTCGTGAGGAGAATCTTGTCGATATTTCGTCGTTTGATCCTTTTGCTGCACCGTCTGGCCAGGGCGAACTTATTTCGATCGACAGCGCATCTTCGGAGAAAATCGATGAGCAGCCGAAGATCACGGATCACGGGTTTGAACAGTTTACAACTGAGTCTGAAGAAAGTGAGGTAATTTCAACGCCTCGGATTGACCTTGGAGATCTCCTAGCGGACTCAGAATCGGCAGAAACTAAGAAACAAGAAAATGTGGTGGAGTCTTCACCGCCGGTTACTTTTGAAGAGTTACAACCGGAAAAAGATTCGAGCGAAACCCAAGCAGAAGGAAATTTGATCGAGTCTTCACCTGCGACTGTAGAAGAACACGCAGCACCGGAAGCCCAGTCGGTAGAAGAAGTCAAACCTGATGAACCTGTTGTGAGTGAGAACGTCCAAAACGTTCCTACCATTGCAGTAGATCCTGTTGTTGAACCCGTTTCCAGCGAGGAAGCTGTGAAGTCTGAAGGAGAAAGTACTAAAGCTGCTACTGTGTCGGACGAGACTTCTACGCAGGAACAGAGTAAAGAAGGAGTTGTCGAGAGCGTCCCAGTGAATGTGGACGAAGAGACCAAGGCTGTCGAGGTAGAAGCTAAACCTGTCGAGGAAGAACCCATGCCTGCAGAGGAGGAAGCTAAGCCTATAGAGCCAGAAGCTAAGCACGTAGAGGAAGGACCCAAACCTGTGGAGGACGAAGCCAAACCTGTGGAACCAGTAGCCAAGCCTGTAGAGGAAAAAGTTAAGCCGGCAGAGGCAGAAGTTAAGCCTTCAAAGGGACAGGCTCCTAAAACAGAAAAACCTGCTGAAAAGGGCACGAAAACAAAGCCACACACAGCTGGTGCAAGACCTAAGTCTCCTCCTAAAGCAGCCCCGGCGGCAAGAACAACGGCAGCCAAAAAACCAACAGGACCTGCAAGGACGACTTCACCTACAAAGGCGCCAACCTCTGCGGCGACGAAAAAAGACGTCAGAGCTCCAGCGACCAAAGCACCTGCTACTAAAACACCAGCTACCAAGCCTGCTGCTCCTAAAGTGCCAGCCACGAAGACAACAACCTCAGCGGCTCCTGGTGCAAAGAAACCCGCTACTAAACCTTCAGTTGCGAAGACAGACGAAGCAAAGAAACCAGAGAAGCCCAAGAGTGCTGCAACAACTCGCCCTCCGACGAAAACCGCGGGTACCAGTGCCTCCGGTGCGGCTCGACCTGCTAGTGCGGCTCCCAAGAAGCCTCCGGCCTCTTCCTCGAGACCTGCTGCCGCTAAGCCCCCTGGTAAAGACGTGAAGGACGCTGGTCCTCCAAAAAGCGCGCCAAAGACAACAGCTTCGAAACCAGCATCCGCCAAACCAACGCCTTCGAGGACAAGCGCTCCTGCAACAAAGCCTGCTGCACCTAAACCAAGCCGAACTCAGAGTGCAAAGCCCAGTGACAAAACAGACGGTGCAGCTAAGCAACCTACTTCACGGCCGCTAAGTGCGAAGCCAAAACCGACGGCTACGACAACGACCGTAAAAAAGACAACAACGACCGTTACCACTAAGACTGGTGCCGGCCCTGCAAGGACCACTACCACGAAAACGGCGACACAAGCTAAGACCGGTCAAGGGAAAACTACTACAACAACCACTAAGAAAGAAACGACAAGGCCTGCCTCGGCTGCTAAAACTACTACTGGTGCCAAGCCCGCGGTCACTGGTCCCAAATCGGCTAAACCTGGCGCGAAACCGTCCACGAAAGCAGCACCTAAGAAAAAAGTGGAAGAGCCTGCAAAAGGAAAGGAGGAGGTCAAACAGGACGAGAAACCAGCATCTCAACCGGAGAAGGTCGACGAACCCGTGGCGCCTGTGACGGACGAGAAGCCTCCTGAAGTTGCCGAGATTGCACCTGAAGAGAAGCCTGCCGAAGCTGTCGAAGTGGTTTCTGAAGAACGTCCAGTCGAAGCAAGTCCCGAAGAGAAATTGATCGAATTAACGCCCGAATCAGCCCCAGCCGAACAAGCTGCCGAACCAGGCGAAGTCCCTCCGGAAGGCGTCGAACAATCGAATGTCGTCACAAAGATCGTCACGAGCGAAACGACGACTATCATCGCAGATGGCGACGAACAATCGACTACCACAACAGAAGAAACGACATTTGAACAGACGGTTGGAGAAAGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W3Y4	GAS2-like protein pickled eggs OS=Drosophila melanogaster OX=7227 GN=pigs PE=2 SV=2
O43903	Growth arrest-specific protein 2 OS=Homo sapiens OX=9606 GN=GAS2 PE=1 SV=1
P11862	Growth arrest-specific protein 2 OS=Mus musculus OX=10090 GN=Gas2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001140 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF02187 all species →	GAS2	Growth-Arrest-Specific Protein 2 Domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036534 all species →	Homologous_superfamily	GAR domain superfamily	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR003108 all species →	Domain	GAR domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46756 all species →	TRANSGELIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0001578 all species →	Biological Process	microtubule bundle formation	Interproscan
GO:0001725 all species →	Cellular Component	stress fiber	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0008093 all species →	Molecular Function	cytoskeletal anchor activity	Interproscan
GO:0031110 all species →	Biological Process	regulation of microtubule polymerization or depolymerization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0051764 all species →	Biological Process	actin crosslink formation	Interproscan
GO:1904825 all species →	Biological Process	protein localization to microtubule plus-end	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.2584.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.