Detailed information of evm.model.Ap1.2606 in Astrangia poculata

Genomic Location: Ap1:26715012...26716256
NR annotation: CAH3146111.1, unnamed protein product, partial [Porites lobata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000581 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap1.2606. This gene does have a gene model — the search simply returned no hit.
 InterPro
No InterPro signature was detected for evm.model.Ap1.2606. This gene does have a gene model — the search simply returned no hit.
 PANTHER
PANTHER termDescriptionSource
PTHR35558
all species →		SGNH_HYDRO DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap1.2606. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.2606.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap1.2606 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
41TPM > 0
4Conditions
2,457.2Max TPM
515.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 14 599.98 2,457.20
whole organism · heat control 12 10 678.56 2,028.27
whole organism · cold challenge 12 9 278.36 843.62
whole organism · heat challenge 11 8 486.53 1,467.53

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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