Gene detail

Detailed information of evm.model.Ap1.2654 in Astrangia poculata

Genomic Location: Ap1:27142134...27145630
NR annotation: XP_020626890.1, F-box/WD repeat-containing protein 7-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2654

atggctggtccaggacgtattgtggatataaatcgtgcgacgactgaagaactggagggtttgaatggagtcgggaaaacaatagcaaagaacatagttgagattcgttctacactaggtggcttttctagcattgaggacttgaaagtgatcccaggtattggacgtttattcatcgatgtacacaaggacagcctttgttgttcgccctcgccgtctcacgagaggcgagagacgaggggctctgccaaagcaaagacaggaaggcaatcattgaacagaaggtctacaccaactgcagcaaacaagggacacagcacacccaaggggagaggtgaatcaggaaaacgaaagctctctagcagtagtcaacagcctgataatgatgaaagtgagaaatcatctcctgaaaagaagttctgtaccccaactcaaaagagactgttaaagctcctcccccttagaaattatggtactatcaagacagcaacacctgtaatgagtccggtggacagccgctgccgacacatgtcattttgcagccatcccccagcaggcctggatgagtggctgcgtacatttcagcagtggacagctgaggagaggaagtacgctcttgatgagattattgagcactgcgagccaacagttgttagacacattatgggtaccattgaaccaaggtttcaacgggacttcatatctctgctgccaagagagcttgctttatatgtgctgtcatttttagaacccactgacttgttacgagctgcacagacctgcaaatgctggcaaacactttgtgacgacaacttgctttggaaacaaaaatgtaagcaagcaaggattgaagaagagccagtgactcctgtaaaatgtaacagacgtagatccaataattcacaacaggtaaaccagaacaccaaagctgtaaatagtccattcaagaaacttttcatgacaaagcaacgggtgtactggaactggagaatgggcccactacgtccatctaaaatcctcaaaggacacgacgaccatgtaattacatgtcttcagttttgcggcagcagaattgttagtggttctgatgatggtactcttaaagtgtggtcggctatatccgggaagtgcctgcgcactcttgtagggcacactggaggggtttggtcatcccagctgagtggcaacattattgtcagtggctcaactgatcgcacgctgaaagtttggaatgcagacactggttactgtatgcacacattgtatggacactcatcaactgttcgctgcatggacatgcacgacggcactgtagtgagtggctctagggatggaactctaagagtttgggatacatcctctggaaattgtcttcatgtgttggttgggcatcttgctgcagtgagatgtgtgaaatatgatggcagacgtgtagtcagcggagcttatgacttcctggtgaaagtgtgggaccctgaaacagaacaatgtatacacacattacaagggcatacaaacagggtctattcactgcaatttgatggcgtgtacattgtcagcggctcactggacacctcgattcgtgtctggcatgttgaaactggacaatgtctacacactttagttggacaccagtctctgaccagtggaatggaactcaagaacaacactttggtgtctggaaatgctgattctacagtgaaaatctgggatatcacttctggacagtgtttacagactttggcaggcccgaataagcaccaaagtgcagttacttgtcttcaatttaacagccggtttgtcatcaccagttcagatgatggcacagttaaaatttgggacttgcgcactggggagttcatcagagatcttgtaaagttggacagtggtggcagtggtggggtggtatggagagtcaaatgtgatgaaaagaagttggtttgtgctgtgggcagcagaaatggcacagaagaaaccaaacttctagtcctggactttgatgtacatgaataa

Transcript

evm.model.Ap1.2654

ATGGCTGGTCCAGGACGTATTGTGGATATAAATCGTGCGACGACTGAAGAACTGGAGGGTTTGAATGGAGTCGGGAAAACAATAGCAAAGAACATAGTTGAGATTCGTTCTACACTAGGTGGCTTTTCTAGCATTGAGGACTTGAAAGTGATCCCAGGTATTGGACGTTTATTCATCGATGTACACAAGGACAGCCTTTGTTGTTCGCCCTCGCCGTCTCACGAGAGGCGAGAGACGAGGGGCTCTGCCAAAGCAAAGACAGGAAGGCAATCATTGAACAGAAGGTCTACACCAACTGCAGCAAACAAGGGACACAGCACACCCAAGGGGAGAGGTGAATCAGGAAAACGAAAGCTCTCTAGCAGTAGTCAACAGCCTGATAATGATGAAAGTGAGAAATCATCTCCTGAAAAGAAGTTCTGTACCCCAACTCAAAAGAGACTGTTAAAGCTCCTCCCCCTTAGAAATTATGGTACTATCAAGACAGCAACACCTGTAATGAGTCCGGTGGACAGCCGCTGCCGACACATGTCATTTTGCAGCCATCCCCCAGCAGGCCTGGATGAGTGGCTGCGTACATTTCAGCAGTGGACAGCTGAGGAGAGGAAGTACGCTCTTGATGAGATTATTGAGCACTGCGAGCCAACAGTTGTTAGACACATTATGGGTACCATTGAACCAAGGTTTCAACGGGACTTCATATCTCTGCTGCCAAGAGAGCTTGCTTTATATGTGCTGTCATTTTTAGAACCCACTGACTTGTTACGAGCTGCACAGACCTGCAAATGCTGGCAAACACTTTGTGACGACAACTTGCTTTGGAAACAAAAATGTAAGCAAGCAAGGATTGAAGAAGAGCCAGTGACTCCTGTAAAATGTAACAGACGTAGATCCAATAATTCACAACAGGTAAACCAGAACACCAAAGCTGTAAATAGTCCATTCAAGAAACTTTTCATGACAAAGCAACGGGTGTACTGGAACTGGAGAATGGGCCCACTACGTCCATCTAAAATCCTCAAAGGACACGACGACCATGTAATTACATGTCTTCAGTTTTGCGGCAGCAGAATTGTTAGTGGTTCTGATGATGGTACTCTTAAAGTGTGGTCGGCTATATCCGGGAAGTGCCTGCGCACTCTTGTAGGGCACACTGGAGGGGTTTGGTCATCCCAGCTGAGTGGCAACATTATTGTCAGTGGCTCAACTGATCGCACGCTGAAAGTTTGGAATGCAGACACTGGTTACTGTATGCACACATTGTATGGACACTCATCAACTGTTCGCTGCATGGACATGCACGACGGCACTGTAGTGAGTGGCTCTAGGGATGGAACTCTAAGAGTTTGGGATACATCCTCTGGAAATTGTCTTCATGTGTTGGTTGGGCATCTTGCTGCAGTGAGATGTGTGAAATATGATGGCAGACGTGTAGTCAGCGGAGCTTATGACTTCCTGGTGAAAGTGTGGGACCCTGAAACAGAACAATGTATACACACATTACAAGGGCATACAAACAGGGTCTATTCACTGCAATTTGATGGCGTGTACATTGTCAGCGGCTCACTGGACACCTCGATTCGTGTCTGGCATGTTGAAACTGGACAATGTCTACACACTTTAGTTGGACACCAGTCTCTGACCAGTGGAATGGAACTCAAGAACAACACTTTGGTGTCTGGAAATGCTGATTCTACAGTGAAAATCTGGGATATCACTTCTGGACAGTGTTTACAGACTTTGGCAGGCCCGAATAAGCACCAAAGTGCAGTTACTTGTCTTCAATTTAACAGCCGGTTTGTCATCACCAGTTCAGATGATGGCACAGTTAAAATTTGGGACTTGCGCACTGGGGAGTTCATCAGAGATCTTGTAAAGTTGGACAGTGGTGGCAGTGGTGGGGTGGTATGGAGAGTCAAATGTGATGAAAAGAAGTTGGTTTGTGCTGTGGGCAGCAGAAATGGCACAGAAGAAACCAAACTTCTAGTCCTGGACTTTGATGTACATGAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1MNN4	F-box/WD repeat-containing protein 7 OS=Bos taurus OX=9913 GN=FBXW7 PE=1 SV=3
Q969H0	F-box/WD repeat-containing protein 7 OS=Homo sapiens OX=9606 GN=FBXW7 PE=1 SV=1
D3Z902	F-box/WD repeat-containing protein 7 OS=Rattus norvegicus OX=10116 GN=Fbxw7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008559 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12836 all species →	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19849 all species →	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10260	FBXW7, SEL10; F-box and WD-40 domain protein 7	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.