Detailed information of evm.model.Ap1.2656 in Astrangia poculata

Genomic Location: Ap1:27151725...27155890
NR annotation: KAJ7369670.1, Vesicle-trafficking protein S22b [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZJW4Vesicle-trafficking protein SEC22b OS=Gallus gallus OX=9031 GN=SEC22B PE=2 SV=1
Q7SXP0Vesicle-trafficking protein SEC22b-B OS=Danio rerio OX=7955 GN=sec22bb PE=2 SV=1
O75396Vesicle-trafficking protein SEC22b OS=Homo sapiens OX=9606 GN=SEC22B PE=1 SV=5
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008558 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00957
all species →		SynaptobrevinSynaptobrevinFamilyInterproscan
PF13774
all species →		LonginRegulated-SNARE-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042855
all species →		Domainv-SNARE, coiled-coil homology domainInterproscan
IPR010908
all species →		DomainLongin domainInterproscan
IPR001388
all species →		FamilySynaptobrevin-likeInterproscan
IPR044565
all species →		FamilyVesicle-trafficking protein Sec22Interproscan
IPR011012
all species →		Homologous_superfamilyLongin-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45837
all species →		VESICLE-TRAFFICKING PROTEIN SEC22BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0000139
all species →		Cellular ComponentGolgi membraneInterproscan
GO:0005484
all species →		Molecular FunctionSNAP receptor activityInterproscan
GO:0005789
all species →		Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0005793
all species →		Cellular Componentendoplasmic reticulum-Golgi intermediate compartmentInterproscan
GO:0006888
all species →		Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006890
all species →		Biological Processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulumInterproscan
GO:0012507
all species →		Cellular ComponentER to Golgi transport vesicle membraneInterproscan
GO:0031201
all species →		Cellular ComponentSNARE complexInterproscan
GO:0048280
all species →		Biological Processvesicle fusion with Golgi apparatusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08517SEC22; vesicle transport protein SEC22-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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