Detailed information of evm.model.Ap1.2686 in Astrangia poculata

Genomic Location: Ap1:27437985...27503740
NR annotation: CAH3038009.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A0R4IBK5E3 ubiquitin-protein ligase rnf213-alpha OS=Danio rerio OX=7955 GN=rnf213a PE=3 SV=1
Q63HN8E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens OX=9606 GN=RNF213 PE=1 SV=3
E9Q555E3 ubiquitin-protein ligase RNF213 OS=Mus musculus OX=10090 GN=Rnf213 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000236 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20173
all species →		ZnF_RZ-typeRZ type zinc finger domainDomainInterproscan
PF13639
all species →		zf-RING_2Ring finger domainDomainInterproscan
PF07728
all species →		AAA_5AAA domain (dynein-related subfamily)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR046439
all species →		DomainZinc finger, RZ-typeInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR003593
all species →		DomainAAA+ ATPase domainInterproscan
IPR031248
all species →		FamilyE3 ubiquitin-protein ligase RNF213Interproscan
IPR011704
all species →		DomainATPase, dynein-related, AAA domainInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22605
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.2686.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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