Genomic Location: Ap1:27585246...27602530
NR annotation: CAH3037991.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.2696 |
| Transcript |
| evm.model.Ap1.2696 |
| Protein |
| evm.model.Ap1.2696 |
| UniProt accession | Description |
|---|---|
| A5PMF6 | Procollagen galactosyltransferase 1 OS=Danio rerio OX=7955 GN=colgalt1 PE=3 SV=1 |
| A5PK45 | Procollagen galactosyltransferase 1 OS=Bos taurus OX=9913 GN=COLGALT1 PE=2 SV=1 |
| A0JPH3 | Procollagen galactosyltransferase 1-A OS=Xenopus laevis OX=8355 GN=colgalt1-a PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003179 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13704 all species → | Glyco_tranf_2_4 | Glycosyl transferase family 2 | Family | Interproscan |
| PF01755 all species → | Glyco_transf_25 | Glycosyltransferase family 25 (LPS biosynthesis protein) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050757 all species → | Family | Collagen-modifying Glycosyltransferase 25 | Interproscan |
| IPR029044 all species → | Homologous_superfamily | Nucleotide-diphospho-sugar transferases | Interproscan |
| IPR002654 all species → | Family | Glycosyl transferase, family 25 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10730 all species → | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0050211 all species → | Molecular Function | procollagen galactosyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11703 | GLT25D; collagen beta-1,O-galactosyltransferase | EC:2.4.1.50 | Glycosyltransferases | ko01003 | deepkoala |
Transcript abundance of evm.model.Ap1.2696 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
