Gene detail

Detailed information of evm.model.Ap1.2712 in Astrangia poculata

Genomic Location: Ap1:27766858...27798653
NR annotation: XP_020604080.1, uncharacterized protein LOC110043017 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2712

atgaccagtaaagagaatttctcagcgtcatgtagtttcaaggacagctacgggtttatccgtggagcaagagagagtgaaagtgagctctttcactttgtttgccgcgagctaaaacaacattactccagtttttatcggaataggaatggtcacgctcgtctgtggtcacagtacatgaaagccaggcagcaggacacgaaaaatgtgtttttcaaagagcaagaaatgaaagcactgctgagggagggtataccgaaaacttgcagaagtgaagtgtggagaagtgcaatggcacaaaaggtggagcacattaaaaaagaaaaggggagagattactatcaaaagctgcttcaacaagtggcgagacgcaagagtgtttctgcaactcatataactgaaactgagaatcagatcaagtgtgatctcctgcggaccatgcccaacaatgaaagatttcgatatgccgactgtgatggggtgaaaaagctgtcaaggattctccatgcgttttgtgttcatcgtccagacatcaattatctgcagggaatgaattttattgtggccatgtgtctacttttcatggatgaagaagacgccttctggtcattcgttgctgtttctgaagtttatcttaaaaactactttgataaaactttgagcggggctttagccgatcagtcggttttgaatgagcttctgagtgaatcgttaccagtcctacacgcgcacctcaagtactatggcgtggacatctccactgttacattcaattggtttatcaccatcttcattgacgctgtaccatttgagactgctgtgcgaatttgggattgttttgttttcgagggtagagaggcattatttcggatcgcagtgggtttgctaaaagttcagcagcccgctctaatgcagttatcttgcccactggaaatcatgcagtacatgaagagagccgccagggtcacttacgacaaagagccaatttttaagtcttcatacgatgaattaaaagtttttccgtctattgcaatactggacgagaagcaagcgaagtatctatcaagcgtcagacaagacagtttgtcaatcacaagggacgagagaacgcgctcccgcgtcagttctttcacagtggagattcccaaccaggaaaaaatcgagaaaccagatcaacacgaaattctggaatgtgcgttggccacaagtcaagacttgtcaagtccggtgtgtttgttctgtggcagtcggttcacagccaaagtttatctactggacatcaacaagaaggagatgaagacacttgacgtagatttgaagtcacgtgttttatgtaccgacatgctggaagatggcaccattttagtggggaccgtatcttggtacatgcacgcgttccttctagagcccagttcggaagtgtggtgcatccaactcaatgactcggtgattgacatcgctcatttaccagatggaaaagtgtttgctgcgttagctgatggatcgattgctgtcctacagaatgctagtagacaggaggctccgtcagaaggttctcacgtgcgggttggtggcgcgccggtcacgtgcattacacttgtgaatgaaaatgtgtggtgtggctgcggtaacaatgtggtcatccttgatggcagtttccttgttgagctcggttcgttggtggtatccaactctcgtcgtcaccaggtctccaagttaacgcacggtaaacatggcgtgtggtgcgctgtaagagggtcatcttgcgttcttcttttggatcacgtgacttttgacgtgcttctcaaggttgatgacgtcacaagccttgacatcagctctgactcaagggtcatcgccttcagcgagtcacgtgtcaccacagttatggcagtgggcgaggaattgtgggtagggcttggtaatggacaggttctgatatttgacgtcattagaaacgatacgtacgaagatgaagcttacgtggtgcttaacgaaagtaaagataatgaaaaatcagtagagagttctacaaaacaactgcaaacaaagtcagaagcagcagaaattacatcttcacaagattcgacgctttgtgatgaggattccaggtcacgcttggaaatcagttcttcaccagagacaaggaatgttactttacctgaaattgcagttacaactaacggcagtgaaaacgaaaatgttcaaggcgaatcgaatgaaacttttgaagtttctgcagatactgtgaacaatcaggaaacgccggtgattgtggaggaaaccaaaactgaagaacaaagaaaacaggacagtatgtaccacaatgactacaggtttggactgcgacttagagttcactaccgcatcaatgaagaagctattcgatgtctgctgttactcagagaggaagatccactgatcctcagttgcgctggctcttttagcgaagaaggggctctctcgatatggcaacggcaaagagaagaggaaacagacgagtggcttccgttttctatcaaacatcggttcacagagaccgctggaccgattccaaggcgcaatgagacctcgcctgtgtttgtgtaa

Transcript

evm.model.Ap1.2712

ATGACCAGTAAAGAGAATTTCTCAGCGTCATGTAGTTTCAAGGACAGCTACGGGTTTATCCGTGGAGCAAGAGAGAGTGAAAGTGAGCTCTTTCACTTTGTTTGCCGCGAGCTAAAACAACATTACTCCAGTTTTTATCGGAATAGGAATGGTCACGCTCGTCTGTGGTCACAGTACATGAAAGCCAGGCAGCAGGACACGAAAAATGTGTTTTTCAAAGAGCAAGAAATGAAAGCACTGCTGAGGGAGGGTATACCGAAAACTTGCAGAAGTGAAGTGTGGAGAAGTGCAATGGCACAAAAGGTGGAGCACATTAAAAAAGAAAAGGGGAGAGATTACTATCAAAAGCTGCTTCAACAAGTGGCGAGACGCAAGAGTGTTTCTGCAACTCATATAACTGAAACTGAGAATCAGATCAAGTGTGATCTCCTGCGGACCATGCCCAACAATGAAAGATTTCGATATGCCGACTGTGATGGGGTGAAAAAGCTGTCAAGGATTCTCCATGCGTTTTGTGTTCATCGTCCAGACATCAATTATCTGCAGGGAATGAATTTTATTGTGGCCATGTGTCTACTTTTCATGGATGAAGAAGACGCCTTCTGGTCATTCGTTGCTGTTTCTGAAGTTTATCTTAAAAACTACTTTGATAAAACTTTGAGCGGGGCTTTAGCCGATCAGTCGGTTTTGAATGAGCTTCTGAGTGAATCGTTACCAGTCCTACACGCGCACCTCAAGTACTATGGCGTGGACATCTCCACTGTTACATTCAATTGGTTTATCACCATCTTCATTGACGCTGTACCATTTGAGACTGCTGTGCGAATTTGGGATTGTTTTGTTTTCGAGGGTAGAGAGGCATTATTTCGGATCGCAGTGGGTTTGCTAAAAGTTCAGCAGCCCGCTCTAATGCAGTTATCTTGCCCACTGGAAATCATGCAGTACATGAAGAGAGCCGCCAGGGTCACTTACGACAAAGAGCCAATTTTTAAGTCTTCATACGATGAATTAAAAGTTTTTCCGTCTATTGCAATACTGGACGAGAAGCAAGCGAAGTATCTATCAAGCGTCAGACAAGACAGTTTGTCAATCACAAGGGACGAGAGAACGCGCTCCCGCGTCAGTTCTTTCACAGTGGAGATTCCCAACCAGGAAAAAATCGAGAAACCAGATCAACACGAAATTCTGGAATGTGCGTTGGCCACAAGTCAAGACTTGTCAAGTCCGGTGTGTTTGTTCTGTGGCAGTCGGTTCACAGCCAAAGTTTATCTACTGGACATCAACAAGAAGGAGATGAAGACACTTGACGTAGATTTGAAGTCACGTGTTTTATGTACCGACATGCTGGAAGATGGCACCATTTTAGTGGGGACCGTATCTTGGTACATGCACGCGTTCCTTCTAGAGCCCAGTTCGGAAGTGTGGTGCATCCAACTCAATGACTCGGTGATTGACATCGCTCATTTACCAGATGGAAAAGTGTTTGCTGCGTTAGCTGATGGATCGATTGCTGTCCTACAGAATGCTAGTAGACAGGAGGCTCCGTCAGAAGGTTCTCACGTGCGGGTTGGTGGCGCGCCGGTCACGTGCATTACACTTGTGAATGAAAATGTGTGGTGTGGCTGCGGTAACAATGTGGTCATCCTTGATGGCAGTTTCCTTGTTGAGCTCGGTTCGTTGGTGGTATCCAACTCTCGTCGTCACCAGGTCTCCAAGTTAACGCACGGTAAACATGGCGTGTGGTGCGCTGTAAGAGGGTCATCTTGCGTTCTTCTTTTGGATCACGTGACTTTTGACGTGCTTCTCAAGGTTGATGACGTCACAAGCCTTGACATCAGCTCTGACTCAAGGGTCATCGCCTTCAGCGAGTCACGTGTCACCACAGTTATGGCAGTGGGCGAGGAATTGTGGGTAGGGCTTGGTAATGGACAGGTTCTGATATTTGACGTCATTAGAAACGATACGTACGAAGATGAAGCTTACGTGGTGCTTAACGAAAGTAAAGATAATGAAAAATCAGTAGAGAGTTCTACAAAACAACTGCAAACAAAGTCAGAAGCAGCAGAAATTACATCTTCACAAGATTCGACGCTTTGTGATGAGGATTCCAGGTCACGCTTGGAAATCAGTTCTTCACCAGAGACAAGGAATGTTACTTTACCTGAAATTGCAGTTACAACTAACGGCAGTGAAAACGAAAATGTTCAAGGCGAATCGAATGAAACTTTTGAAGTTTCTGCAGATACTGTGAACAATCAGGAAACGCCGGTGATTGTGGAGGAAACCAAAACTGAAGAACAAAGAAAACAGGACAGTATGTACCACAATGACTACAGGTTTGGACTGCGACTTAGAGTTCACTACCGCATCAATGAAGAAGCTATTCGATGTCTGCTGTTACTCAGAGAGGAAGATCCACTGATCCTCAGTTGCGCTGGCTCTTTTAGCGAAGAAGGGGCTCTCTCGATATGGCAACGGCAAAGAGAAGAGGAAACAGACGAGTGGCTTCCGTTTTCTATCAAACATCGGTTCACAGAGACCGCTGGACCGATTCCAAGGCGCAATGAGACCTCGCCTGTGTTTGTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U0J8	TBC1 domain family member 2B OS=Mus musculus OX=10090 GN=Tbc1d2b PE=1 SV=2
Q9UPU7	TBC1 domain family member 2B OS=Homo sapiens OX=9606 GN=TBC1D2B PE=1 SV=2
B1AVH7	TBC1 domain family member 2A OS=Mus musculus OX=10090 GN=Tbc1d2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003157 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF19056 all species →	WD40_2	WD40 repeated domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR050302 all species →	Family	Rab GTPase-activating TBC domain-containing protein	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47219 all species →	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.2712.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.