Gene detail

Detailed information of evm.model.Ap1.2734 in Astrangia poculata

Genomic Location: Ap1:27976744...27994509
NR annotation: XP_020618984.1, rab GTPase-activating protein 1-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2734

atggcagatcaaaaaaccggggcaagtgaacaatgtgtaaaaggagaaagcaattcaagcagtccagaacaacctcggagtccaggttctaagtcgacaaacagtgatcatgaatatgtcatgctagctgcgcctgatattgaatctgattctggctctgctgtgtcagtctcttctatggacaaaagtaaatcccaggggagtagtgtgagtagttttgctgatgttataacccctgacatggaggctaccttggagaagggtccgactgaggaagaagtacaacatttggtggaagatgcaaaacaagatattttgcacacctctgcttctcgtgaagaggtttttcctggtcaggacaaaggagaggaccttcaggaaggtttaccaagtaacgtaaattcagcaggcacaaatggtagtgatggacaaatagccagcgaaaaccatattgccaatccacttgttgttgaagatgatacacaagcggaagatgacaagcctgatggtggtctggtaagacaacgttcgtcatcagatggtgacgccaacacaggtcaggctgcaaatgtagctcagttcaacactggagaacgagtgagagcaagcactcatccaggacactctgatgacgaaggtgatgatagtgccattttatttgacgggatcacttatttaggatcctcgacagtaaatgcacctgtcagtgaaattgaactgaaaaggacaatgtctatcctgcgagagcagacggaagtcactattgatgttttgctttatgttggttcaacatcagagagtatgatcagactcaaggaccctgagactcaggctgatattgcaacttatcgcatacaaaggattttgttttgtggtcgtggtgatattgaaggaagtgaaaaggactgttttgccttcaatactgtccatggagactcagatatcttccattgccatgtattcaggtgtgaagatccagaaaaggctggaaagatcttgaagacatttgctttatcctttagaagacacagaaagagaaagcagcagtctcagcaatcttctgttgactcctctacattggtgactggtgtcagcaaccttgtcttcaaatttgacgtgactcttgatattcttgaggaagacaacaagggattttcctctgctgcaagggacaaaaactgtttcaaacttcgacaagatttgaaaaagaaagtttcaataacagtgcagcaactgacaaacaaacatctcattgtggaaaggtgttttgggctccttatctgtccagggaagaatgttcggtattctgacatgcaccttttgagtgagctatcaatggaagttgcagatggtggcaaaacgtattacataagtggcttatggaatcctgctgtacgtgacttgttagttttaaacacagaaacccctaaagatacaaggctgtttgtcacaatagctgttgacttggttgttactggagtaacagaacctgtaaggttcattgtggagacaaaagcaaaaattttccccagtggagaaaagttcttctggagtcccagtaaaccaaaattccatgaaacttacattatggaactgaaggaggttatcgacactgaaacagggcagaaaagttgtgaagtgaagagtatcaaaactgaactcagtatagaagcttctaaaaatttgtcaaaaagacaacccagccttaatcggcagctgtctggaggggacagaaactctgatgacgatgatgaagatgatgaaccgctgctatcaggatcaggagccgtacagaaagaatgcactgaggaggagctaggaagctgggctgacctgttgagtaaatggaaggatgtcaccctaaggccaagacagctccctggacttgttagaaagggcgtacctgatcctctccgaggtcaagtgtggcagatgatggctggtctaagagaaaatgatgaacttcttgagggctacaagcatttcattaagaaggaatctccaacagagcaagtgatcgtgtgggacattcatcgtacattcccagcacatgaatattttaagagcaccggaggggagggtcaggagatgttgtataaaatcagcaaagcttactctgtttatgacgaggaagtaggttactgtcaagggctgtcattcctttcagctgtgctgctgctgcatcttccagaggagcaagcctttgcactgctggtgaagatcatgagtgattacgggctgagagatattttcaagcaggactttgagcagcttcacctcaagtttttccagctggaaagaatgattgaaggaatgagtgttatttttcaagttgccttgggcctcttaaaggcgtcccgtagagagctcattcaaatggattttgaacaaattctgaagtatttcagagtgtccatgccaaaaaagtacctggacgaagaggaatataaaaaactcatcacctctgctctgggttttagggtcaccaacagaaagatgaagaaatacgaaaaggaatatttgttacagaaagagcaagaggcacaacttgaagacccggtagaaaggcttcagcgtgaaaacaagaggctctttgaagccaacttgagacttgaacaagaaaatgataatcttgctcacgagttagtcactactaaagtggaattacacaccaagctcgcagaggcagaagagaaagtagaagaattatccaaggcgctaagtaatactactatatcactggctgaagcagaggaccaacgagaaaagttcaaacaagaaggagctcagataaaagaaatgtggcggcagaacattgagcaagcagaagaggagaggaagcggcacaccgccattatagaggaatacaaaaagatctgctctagagtggatgaaagaagtgaaaagttaaaggaagatttacaaaaggaactcttggaggtcaagagacgcgttggatcgtgtgaaaactgcgctacgctcttctcagaggaaggtcacgtgtcactggatggagaggccactgttgcattcagaacaagcgtcaaagtggtagattccgagcagcgccttagggaactggaactggagcttgcgcagaccaagctttccctggtagaatccgagtgtcgttcccaggagttagagcacaggctcgcggccattgaagctgcagctggtgaaagcaaaccatggttcaagagaattagtcttgtcaaagacgccgggaagtga

Transcript

evm.model.Ap1.2734

ATGGCAGATCAAAAAACCGGGGCAAGTGAACAATGTGTAAAAGGAGAAAGCAATTCAAGCAGTCCAGAACAACCTCGGAGTCCAGGTTCTAAGTCGACAAACAGTGATCATGAATATGTCATGCTAGCTGCGCCTGATATTGAATCTGATTCTGGCTCTGCTGTGTCAGTCTCTTCTATGGACAAAAGTAAATCCCAGGGGAGTAGTGTGAGTAGTTTTGCTGATGTTATAACCCCTGACATGGAGGCTACCTTGGAGAAGGGTCCGACTGAGGAAGAAGTACAACATTTGGTGGAAGATGCAAAACAAGATATTTTGCACACCTCTGCTTCTCGTGAAGAGGTTTTTCCTGGTCAGGACAAAGGAGAGGACCTTCAGGAAGGTTTACCAAGTAACGTAAATTCAGCAGGCACAAATGGTAGTGATGGACAAATAGCCAGCGAAAACCATATTGCCAATCCACTTGTTGTTGAAGATGATACACAAGCGGAAGATGACAAGCCTGATGGTGGTCTGGTAAGACAACGTTCGTCATCAGATGGTGACGCCAACACAGGTCAGGCTGCAAATGTAGCTCAGTTCAACACTGGAGAACGAGTGAGAGCAAGCACTCATCCAGGACACTCTGATGACGAAGGTGATGATAGTGCCATTTTATTTGACGGGATCACTTATTTAGGATCCTCGACAGTAAATGCACCTGTCAGTGAAATTGAACTGAAAAGGACAATGTCTATCCTGCGAGAGCAGACGGAAGTCACTATTGATGTTTTGCTTTATGTTGGTTCAACATCAGAGAGTATGATCAGACTCAAGGACCCTGAGACTCAGGCTGATATTGCAACTTATCGCATACAAAGGATTTTGTTTTGTGGTCGTGGTGATATTGAAGGAAGTGAAAAGGACTGTTTTGCCTTCAATACTGTCCATGGAGACTCAGATATCTTCCATTGCCATGTATTCAGGTGTGAAGATCCAGAAAAGGCTGGAAAGATCTTGAAGACATTTGCTTTATCCTTTAGAAGACACAGAAAGAGAAAGCAGCAGTCTCAGCAATCTTCTGTTGACTCCTCTACATTGGTGACTGGTGTCAGCAACCTTGTCTTCAAATTTGACGTGACTCTTGATATTCTTGAGGAAGACAACAAGGGATTTTCCTCTGCTGCAAGGGACAAAAACTGTTTCAAACTTCGACAAGATTTGAAAAAGAAAGTTTCAATAACAGTGCAGCAACTGACAAACAAACATCTCATTGTGGAAAGGTGTTTTGGGCTCCTTATCTGTCCAGGGAAGAATGTTCGGTATTCTGACATGCACCTTTTGAGTGAGCTATCAATGGAAGTTGCAGATGGTGGCAAAACGTATTACATAAGTGGCTTATGGAATCCTGCTGTACGTGACTTGTTAGTTTTAAACACAGAAACCCCTAAAGATACAAGGCTGTTTGTCACAATAGCTGTTGACTTGGTTGTTACTGGAGTAACAGAACCTGTAAGGTTCATTGTGGAGACAAAAGCAAAAATTTTCCCCAGTGGAGAAAAGTTCTTCTGGAGTCCCAGTAAACCAAAATTCCATGAAACTTACATTATGGAACTGAAGGAGGTTATCGACACTGAAACAGGGCAGAAAAGTTGTGAAGTGAAGAGTATCAAAACTGAACTCAGTATAGAAGCTTCTAAAAATTTGTCAAAAAGACAACCCAGCCTTAATCGGCAGCTGTCTGGAGGGGACAGAAACTCTGATGACGATGATGAAGATGATGAACCGCTGCTATCAGGATCAGGAGCCGTACAGAAAGAATGCACTGAGGAGGAGCTAGGAAGCTGGGCTGACCTGTTGAGTAAATGGAAGGATGTCACCCTAAGGCCAAGACAGCTCCCTGGACTTGTTAGAAAGGGCGTACCTGATCCTCTCCGAGGTCAAGTGTGGCAGATGATGGCTGGTCTAAGAGAAAATGATGAACTTCTTGAGGGCTACAAGCATTTCATTAAGAAGGAATCTCCAACAGAGCAAGTGATCGTGTGGGACATTCATCGTACATTCCCAGCACATGAATATTTTAAGAGCACCGGAGGGGAGGGTCAGGAGATGTTGTATAAAATCAGCAAAGCTTACTCTGTTTATGACGAGGAAGTAGGTTACTGTCAAGGGCTGTCATTCCTTTCAGCTGTGCTGCTGCTGCATCTTCCAGAGGAGCAAGCCTTTGCACTGCTGGTGAAGATCATGAGTGATTACGGGCTGAGAGATATTTTCAAGCAGGACTTTGAGCAGCTTCACCTCAAGTTTTTCCAGCTGGAAAGAATGATTGAAGGAATGAGTGTTATTTTTCAAGTTGCCTTGGGCCTCTTAAAGGCGTCCCGTAGAGAGCTCATTCAAATGGATTTTGAACAAATTCTGAAGTATTTCAGAGTGTCCATGCCAAAAAAGTACCTGGACGAAGAGGAATATAAAAAACTCATCACCTCTGCTCTGGGTTTTAGGGTCACCAACAGAAAGATGAAGAAATACGAAAAGGAATATTTGTTACAGAAAGAGCAAGAGGCACAACTTGAAGACCCGGTAGAAAGGCTTCAGCGTGAAAACAAGAGGCTCTTTGAAGCCAACTTGAGACTTGAACAAGAAAATGATAATCTTGCTCACGAGTTAGTCACTACTAAAGTGGAATTACACACCAAGCTCGCAGAGGCAGAAGAGAAAGTAGAAGAATTATCCAAGGCGCTAAGTAATACTACTATATCACTGGCTGAAGCAGAGGACCAACGAGAAAAGTTCAAACAAGAAGGAGCTCAGATAAAAGAAATGTGGCGGCAGAACATTGAGCAAGCAGAAGAGGAGAGGAAGCGGCACACCGCCATTATAGAGGAATACAAAAAGATCTGCTCTAGAGTGGATGAAAGAAGTGAAAAGTTAAAGGAAGATTTACAAAAGGAACTCTTGGAGGTCAAGAGACGCGTTGGATCGTGTGAAAACTGCGCTACGCTCTTCTCAGAGGAAGGTCACGTGTCACTGGATGGAGAGGCCACTGTTGCATTCAGAACAAGCGTCAAAGTGGTAGATTCCGAGCAGCGCCTTAGGGAACTGGAACTGGAGCTTGCGCAGACCAAGCTTTCCCTGGTAGAATCCGAGTGTCGTTCCCAGGAGTTAGAGCACAGGCTCGCGGCCATTGAAGCTGCAGCTGGTGAAAGCAAACCATGGTTCAAGAGAATTAGTCTTGTCAAAGACGCCGGGAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y3P9	Rab GTPase-activating protein 1 OS=Homo sapiens OX=9606 GN=RABGAP1 PE=1 SV=3
Q5RAN1	Rab GTPase-activating protein 1 OS=Pongo abelii OX=9601 GN=RABGAP1 PE=2 SV=1
A2AWA9	Rab GTPase-activating protein 1 OS=Mus musculus OX=10090 GN=Rabgap1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001615 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF12473 all species →	DUF3694	Kinesin protein	Family	Interproscan
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR022164 all species →	Domain	Kinesin-like	Interproscan
IPR050302 all species →	Family	Rab GTPase-activating TBC domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47219 all species →	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap1.2734. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20284	RABGAP1, GAPCENA; Rab GTPase-activating protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.