Gene detail

Detailed information of evm.model.Ap1.2736 in Astrangia poculata

Genomic Location: Ap1:27999500...28028165
NR annotation: XP_020618981.1, potassium channel subfamily T member 1-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2736

atggcgtcgagcggaggagggaagaaagttagaatacagactaaagtaaaaaactcccccaaaccggtcgctatcactactgttgcgaatgaattcgattctcttgtacctaggtatcgactgagggatcttctttcgtcagataaaggcgaggacaaggaaagggtgcacgttgagcattatgtacatgacaagtcatttaaagagagagttaaattctattttgtaactgatcaaagatctagtataagatggcagatatttcgcttcacactgaagatagtgtcatgtgcactatatgttgttcgcagtgtccaggacacagaacctaaccaagcaggcggttttggatgtccagaaaatagaactgacaatccagattggtcttgtcctgaatacattgaaggagaattttattggtggtcattgctgtgggttcatagaccttttgaactatggattatacagacaatcattgcagtttatagcatgctggatgcatttctacttagttacttaacttacaagggaggctcaatccttaatcaaattgtaaatggccgtctctttgcagagatttttctaggattaccttttttagtatctaatgaccttcacagacttgttctccgtcagcagtctgcattatcacaaaaagttcttatagtgtttggaacagtttgctgtatcttgtttacgggaatatgtggcatccatcaccttgagagaccagcttcaaagtggaacttttttgtgtgtatttggtttgtggtggtgacattcagtacagttggttatggcgaatatactccaaatgactggccagcacagacgtttgttataatcatgattgcctgtgctctcattttgcttcctgttgagttagaacagctggccttcttactggtcactcgtcagaaggaaggtgggacctttaatcgcatgctagctggctctgagaaacatgtggttttatgtgcaacaattctgagaccaacaatgctgattgatttcttaaacgagttctatgctgatgccagattacaggatgtacatgtggttcttctttgcccttcggagcttgacagcacattgagaatcctgttacaagtaccactgtggtctcagagggtaacatacttaaaaggatctgcccttattgatgaagatcttatcagagctagggttgaggatgctgagggatgctttattctcactgacagatacgccgatgacagggaggctgctgacaagcacaccattttgaggacatgggctatccaagactttgctccagccacacctttatatgtacagatccttaagccagagaacaagttccatgtcagctttgcagagcatgtagtctgtgaggatgaagtcaaacatgcactcttggctagtaactgtgtgtgtccagggatctcaacctattttactcttcttctccacactcttcatgaacagagcggtggatcagaggactggcatgatatgtatggaaagtgtgcaggaaatgaaatatacgacattcgcttgggcgacagcaagatcttcagaccatatgcttacaagaccttcacgcatgcggcctttcatgcacacaagaagtatggagtgacactatttgcagttcgtccagttgggaaaaattcacgcattatgttaaaccctggtccctcacatgtaatgaattatgaagatcgttgcttctacattgcaatctcaagtgaagaagacactgcattcaaagcctacaaagagccaaaacagcaagtcagcctgtttaaaggcagcttccgccagaaaaatgactccttcatcactgcaagctctgtagctcttgaactaagaacagatggaggcgaaccagttggccttaaatactttgatgaggttcctgcaaatggtgttggacatggtagctccagtgatcaagccatgccttcctcggcacttaaaccagggcatgatctgggatctcaggagaaaaaagtgtcgaagggaactaaggaagttaattttgatgttggaaattccagcagacgctcatcaaactctgtctatgtacctaatgaatcagatacggaggaagaagaagcttctgaacaggatttagatttgcttgatgacacaagtagaataccttgttacgtgactggagtcccaccctgtgctttgtatattggtcgtactcctataagatgccaccttctgaagactcctaaaaaatgttgttgtttaggacttaggaatgaggcctgtgtagacagagatcttaatgacagtgctagattacaccagaggcagcatggagctatcatcgtagcatctcctgttgctgaagctggattgtacaacttcattcttcctttgagagcttaccagcggcctaagtgcacccttaaacccattgtgcttcttctcaaagaagaacccagtgaagatttcttgatggcagtttgtcactttcccatgctgtattacatgataggaacgataaacagtctggatgaccttctcaaagctggttgtcttcacgctgacagcatagtggttgtaggttatcggtctcatggtcagatgtacgatgaagaacacatggcagacgcaagcaccatagtagatgtacagagtatctacaggtgctttccaagagcaactttgattgttgagctgacacacgcttctaacatgcgcttcatgaagttcaatgctgatatgtcccttccacctggactacaaagtgaatcattggccagctttaaaacacgaagcttcagagagagtgtcaagaggcgaatcaagcagcagaacaaggaccacctcaactacatgttccgtgaaccctttgctgctggtcacgtgttcagtatgagcatgctggatactctgctctatcaggcatttgtgaaggagtacatgatctacctggttagactgctgttaggctgtgaacagtctcccggatcaggatatctctccgcattgaaaataactgaagatcacatttggatcgacacttacggaagacttttccaacgactctgctcgaccaattgtgcgattcctattggtctttatcgatcacatgtgacagaggaggactttacagatgcttttccaaggagaagaaagaaagaaattcgggacatctcagacattatagagcacaggatgaaaacattgaatctagttggaagtcctgacatgagccacagatcaggcaattcctatgtggtagttaaccctaatcctgagttccagattcaagaaggggacgtcatttacctgattcgtccttgtaacacacacacgtcagatacagaggaggaacctgctgatccagacatgcttgatgatgatttacccaatacgagtcttatgcttctaatgtctggagcaggctgggtggggctgcgctacttgcagcccgctgaagaagcgttttcttctgtttcgcgcccacactcatctcttgtaagaaatgttacttcccagaaggagggagggaggaggggaatttccatgaacggtggaaactttgaggagaaccttggagtgatccacattcctaggacacaacacagtgtcccagtgtccctataa

Transcript

evm.model.Ap1.2736

ATGGCGTCGAGCGGAGGAGGGAAGAAAGTTAGAATACAGACTAAAGTAAAAAACTCCCCCAAACCGGTCGCTATCACTACTGTTGCGAATGAATTCGATTCTCTTGTACCTAGGTATCGACTGAGGGATCTTCTTTCGTCAGATAAAGGCGAGGACAAGGAAAGGGTGCACGTTGAGCATTATGTACATGACAAGTCATTTAAAGAGAGAGTTAAATTCTATTTTGTAACTGATCAAAGATCTAGTATAAGATGGCAGATATTTCGCTTCACACTGAAGATAGTGTCATGTGCACTATATGTTGTTCGCAGTGTCCAGGACACAGAACCTAACCAAGCAGGCGGTTTTGGATGTCCAGAAAATAGAACTGACAATCCAGATTGGTCTTGTCCTGAATACATTGAAGGAGAATTTTATTGGTGGTCATTGCTGTGGGTTCATAGACCTTTTGAACTATGGATTATACAGACAATCATTGCAGTTTATAGCATGCTGGATGCATTTCTACTTAGTTACTTAACTTACAAGGGAGGCTCAATCCTTAATCAAATTGTAAATGGCCGTCTCTTTGCAGAGATTTTTCTAGGATTACCTTTTTTAGTATCTAATGACCTTCACAGACTTGTTCTCCGTCAGCAGTCTGCATTATCACAAAAAGTTCTTATAGTGTTTGGAACAGTTTGCTGTATCTTGTTTACGGGAATATGTGGCATCCATCACCTTGAGAGACCAGCTTCAAAGTGGAACTTTTTTGTGTGTATTTGGTTTGTGGTGGTGACATTCAGTACAGTTGGTTATGGCGAATATACTCCAAATGACTGGCCAGCACAGACGTTTGTTATAATCATGATTGCCTGTGCTCTCATTTTGCTTCCTGTTGAGTTAGAACAGCTGGCCTTCTTACTGGTCACTCGTCAGAAGGAAGGTGGGACCTTTAATCGCATGCTAGCTGGCTCTGAGAAACATGTGGTTTTATGTGCAACAATTCTGAGACCAACAATGCTGATTGATTTCTTAAACGAGTTCTATGCTGATGCCAGATTACAGGATGTACATGTGGTTCTTCTTTGCCCTTCGGAGCTTGACAGCACATTGAGAATCCTGTTACAAGTACCACTGTGGTCTCAGAGGGTAACATACTTAAAAGGATCTGCCCTTATTGATGAAGATCTTATCAGAGCTAGGGTTGAGGATGCTGAGGGATGCTTTATTCTCACTGACAGATACGCCGATGACAGGGAGGCTGCTGACAAGCACACCATTTTGAGGACATGGGCTATCCAAGACTTTGCTCCAGCCACACCTTTATATGTACAGATCCTTAAGCCAGAGAACAAGTTCCATGTCAGCTTTGCAGAGCATGTAGTCTGTGAGGATGAAGTCAAACATGCACTCTTGGCTAGTAACTGTGTGTGTCCAGGGATCTCAACCTATTTTACTCTTCTTCTCCACACTCTTCATGAACAGAGCGGTGGATCAGAGGACTGGCATGATATGTATGGAAAGTGTGCAGGAAATGAAATATACGACATTCGCTTGGGCGACAGCAAGATCTTCAGACCATATGCTTACAAGACCTTCACGCATGCGGCCTTTCATGCACACAAGAAGTATGGAGTGACACTATTTGCAGTTCGTCCAGTTGGGAAAAATTCACGCATTATGTTAAACCCTGGTCCCTCACATGTAATGAATTATGAAGATCGTTGCTTCTACATTGCAATCTCAAGTGAAGAAGACACTGCATTCAAAGCCTACAAAGAGCCAAAACAGCAAGTCAGCCTGTTTAAAGGCAGCTTCCGCCAGAAAAATGACTCCTTCATCACTGCAAGCTCTGTAGCTCTTGAACTAAGAACAGATGGAGGCGAACCAGTTGGCCTTAAATACTTTGATGAGGTTCCTGCAAATGGTGTTGGACATGGTAGCTCCAGTGATCAAGCCATGCCTTCCTCGGCACTTAAACCAGGGCATGATCTGGGATCTCAGGAGAAAAAAGTGTCGAAGGGAACTAAGGAAGTTAATTTTGATGTTGGAAATTCCAGCAGACGCTCATCAAACTCTGTCTATGTACCTAATGAATCAGATACGGAGGAAGAAGAAGCTTCTGAACAGGATTTAGATTTGCTTGATGACACAAGTAGAATACCTTGTTACGTGACTGGAGTCCCACCCTGTGCTTTGTATATTGGTCGTACTCCTATAAGATGCCACCTTCTGAAGACTCCTAAAAAATGTTGTTGTTTAGGACTTAGGAATGAGGCCTGTGTAGACAGAGATCTTAATGACAGTGCTAGATTACACCAGAGGCAGCATGGAGCTATCATCGTAGCATCTCCTGTTGCTGAAGCTGGATTGTACAACTTCATTCTTCCTTTGAGAGCTTACCAGCGGCCTAAGTGCACCCTTAAACCCATTGTGCTTCTTCTCAAAGAAGAACCCAGTGAAGATTTCTTGATGGCAGTTTGTCACTTTCCCATGCTGTATTACATGATAGGAACGATAAACAGTCTGGATGACCTTCTCAAAGCTGGTTGTCTTCACGCTGACAGCATAGTGGTTGTAGGTTATCGGTCTCATGGTCAGATGTACGATGAAGAACACATGGCAGACGCAAGCACCATAGTAGATGTACAGAGTATCTACAGGTGCTTTCCAAGAGCAACTTTGATTGTTGAGCTGACACACGCTTCTAACATGCGCTTCATGAAGTTCAATGCTGATATGTCCCTTCCACCTGGACTACAAAGTGAATCATTGGCCAGCTTTAAAACACGAAGCTTCAGAGAGAGTGTCAAGAGGCGAATCAAGCAGCAGAACAAGGACCACCTCAACTACATGTTCCGTGAACCCTTTGCTGCTGGTCACGTGTTCAGTATGAGCATGCTGGATACTCTGCTCTATCAGGCATTTGTGAAGGAGTACATGATCTACCTGGTTAGACTGCTGTTAGGCTGTGAACAGTCTCCCGGATCAGGATATCTCTCCGCATTGAAAATAACTGAAGATCACATTTGGATCGACACTTACGGAAGACTTTTCCAACGACTCTGCTCGACCAATTGTGCGATTCCTATTGGTCTTTATCGATCACATGTGACAGAGGAGGACTTTACAGATGCTTTTCCAAGGAGAAGAAAGAAAGAAATTCGGGACATCTCAGACATTATAGAGCACAGGATGAAAACATTGAATCTAGTTGGAAGTCCTGACATGAGCCACAGATCAGGCAATTCCTATGTGGTAGTTAACCCTAATCCTGAGTTCCAGATTCAAGAAGGGGACGTCATTTACCTGATTCGTCCTTGTAACACACACACGTCAGATACAGAGGAGGAACCTGCTGATCCAGACATGCTTGATGATGATTTACCCAATACGAGTCTTATGCTTCTAATGTCTGGAGCAGGCTGGGTGGGGCTGCGCTACTTGCAGCCCGCTGAAGAAGCGTTTTCTTCTGTTTCGCGCCCACACTCATCTCTTGTAAGAAATGTTACTTCCCAGAAGGAGGGAGGGAGGAGGGGAATTTCCATGAACGGTGGAAACTTTGAGGAGAACCTTGGAGTGATCCACATTCCTAGGACACAACACAGTGTCCCAGTGTCCCTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZPR4	Potassium channel subfamily T member 1 OS=Mus musculus OX=10090 GN=Kcnt1 PE=1 SV=2
Q5JUK3	Potassium channel subfamily T member 1 OS=Homo sapiens OX=9606 GN=KCNT1 PE=1 SV=2
Q9Z258	Potassium channel subfamily T member 1 OS=Rattus norvegicus OX=10116 GN=Kcnt1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002912 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03493 all species →	BK_channel_a	Calcium-activated BK potassium channel alpha subunit	Family	Interproscan
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003929 all species →	Domain	Calcium-activated potassium channel BK, alpha subunit	Interproscan
IPR047871 all species →	Family	Calcium-activated potassium channel slowpoke-like	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10027 all species →	CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005228 all species →	Molecular Function	intracellular sodium-activated potassium channel activity	Interproscan
GO:0005267 all species →	Molecular Function	potassium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015271 all species →	Molecular Function	outward rectifier potassium channel activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04946	KCNT1, KNA1.1; potassium channel subfamily T member 1	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.