Detailed information of evm.model.Ap1.2738 in Astrangia poculata

Genomic Location: Ap1:28050765...28051256
NR annotation: CAH3040349.1, unnamed protein product, partial [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9LW68Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1
Q9FGH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana OX=3702 GN=LSH5 PE=1 SV=1
Q8GVZ6Protein G1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000274 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04852
all species →		ALOG_domALOG domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006936
all species →		DomainALOG domainInterproscan
IPR040222
all species →		FamilyALOG familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31165
all species →		PROTEIN G1-LIKE2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0009299
all species →		Biological ProcessmRNA transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.2738.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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