Detailed information of evm.model.Ap1.2750 in Astrangia poculata

Genomic Location: Ap1:28151191...28187669
NR annotation: XP_022783796.1, myomegalin-like isoform X1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q19UN5CDK5 regulatory subunit-associated protein 2 OS=Pan troglodytes OX=9598 GN=CDK5RAP2 PE=2 SV=1
Q96SN8CDK5 regulatory subunit-associated protein 2 OS=Homo sapiens OX=9606 GN=CDK5RAP2 PE=1 SV=5
Q9JLH5CDK5 regulatory subunit-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Cdk5rap2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001978 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07989
all species →		Cnn_1NCentrosomin N-terminal motif 1Coiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052593
all species →		FamilyMicrotubule-associated AKAP9-binding proteinInterproscan
IPR012943
all species →		DomainCentrosomin, N-terminal motif 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46501
all species →		MYOMEGALINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005794
all species →		Cellular ComponentGolgi apparatusInterproscan
GO:0005813
all species →		Cellular ComponentcentrosomeInterproscan
GO:0007098
all species →		Biological Processcentrosome cycleInterproscan
GO:0060090
all species →		Molecular Functionmolecular adaptor activityInterproscan
GO:0090063
all species →		Biological Processpositive regulation of microtubule nucleationInterproscan
GO:1903358
all species →		Biological Processregulation of Golgi organizationInterproscan
GO:0005815
all species →		Cellular Componentmicrotubule organizing centerInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16542CDK5RAP2; CDK5 regulatory subunit-associated protein 2-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap1.2750 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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