Detailed information of evm.model.Ap1.2770 in Astrangia poculata

Genomic Location: Ap1:28434958...28436982
NR annotation: KAH0520508.1, Transcription initiation factor IIB [Microtus ochrogaster]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P62915Transcription initiation factor IIB OS=Mus musculus OX=10090 GN=Gtf2b PE=1 SV=1
P62916Transcription initiation factor IIB OS=Rattus norvegicus OX=10116 GN=Gtf2b PE=2 SV=1
Q00403Transcription initiation factor IIB OS=Homo sapiens OX=9606 GN=GTF2B PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006822 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00382
all species →		TFIIBTranscription factor TFIIB repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036915
all species →		Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR013150
all species →		DomainTranscription factor TFIIB, cyclin-like domainInterproscan
IPR013763
all species →		DomainCyclin-like domainInterproscan
IPR000812
all species →		FamilyTranscription factor TFIIBInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11618
all species →		TRANSCRIPTION INITIATION FACTOR IIB-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0017025
all species →		Molecular FunctionTBP-class protein bindingInterproscan
GO:0006352
all species →		Biological ProcessDNA-templated transcription initiationInterproscan
GO:0070897
all species →		Biological Processtranscription preinitiation complex assemblyInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006367
all species →		Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0016251
all species →		Molecular FunctionRNA polymerase II general transcription initiation factor activityInterproscan
GO:0097550
all species →		Cellular Componenttranscription preinitiation complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.2770.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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