Detailed information of evm.model.Ap1.2786 in Astrangia poculata

Genomic Location: Ap1:28578705...28581961
NR annotation: KAJ7339434.1, Doublesex- and mab-3- transcription factor A2 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q19291Doublesex- and mab-3-related transcription factor dmd-5 OS=Caenorhabditis elegans OX=6239 GN=dmd-5 PE=1 SV=2
J7FCF0Doublesex and mab-3 related transcription factor 3, truncated OS=Equus caballus OX=9796 GN=DMRT3 PE=2 SV=1
Q71MM5Doublesex- and mab-3-related transcription factor 1 OS=Danio rerio OX=7955 GN=dmrt1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000886 (this species only)
Transcription factor familyDM · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00751
all species →		DMDM DNA binding domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001275
all species →		DomainDM DNA-binding domainInterproscan
IPR036407
all species →		Homologous_superfamilyDM DNA-binding domain superfamilyInterproscan
IPR026607
all species →		FamilyDMRT familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12322
all species →		DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRTInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565
all species →		Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007548
all species →		Biological Processsex differentiationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.2786.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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