Genomic Location: Ap1:28603280...28608382
NR annotation: KAJ7339431.1, hypothetical protein OS493_005829 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.2789 |
| Transcript |
| evm.model.Ap1.2789 |
| Protein |
| evm.model.Ap1.2789 |
| UniProt accession | Description |
|---|---|
| A7UX13 | Hercynylcysteine sulfoxide lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=egt-2 PE=1 SV=1 |
| Q5MNH3 | L-cysteine desulfhydrase-like protein lolT2 OS=Epichloe uncinata OX=5050 GN=lolT2 PE=2 SV=1 |
| Q5MNI0 | L-cysteine desulfhydrase-like protein lolT1 OS=Epichloe uncinata OX=5050 GN=lolT1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002316 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00266 all species → | Aminotran_5 | Aminotransferase class-V | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR000192 all species → | Domain | Aminotransferase class V domain | Interproscan |
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43092 all species → | L-CYSTEINE DESULFHYDRASE | Interproscan |
evm.model.Ap1.2789. This gene does have a gene model — the search simply returned no hit.| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20247 | EGT2; hercynylcysteine S-oxide lyase | EC:4.4.1.36 | Histidine metabolism | ko00340 | deepkoala |
Transcript abundance of evm.model.Ap1.2789 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
