Gene detail

Detailed information of evm.model.Ap1.2953 in Astrangia poculata

Genomic Location: Ap1:30330473...30334799
NR annotation: CAH3037649.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.2953

atggcatccacaagcacatcagggacatttggacaaatggctaaatcggaatacagaaactggcttgctctcggccatgccttaacaaccgtgctttgtcaaggtcttcgtccgttcattacccgagagatggagaccttccataggaatgtatcagcgagaattgctggaccctgcatgtgtgtccatgtcccgagaagaagaccaaacgagtatcacgacatgactacgtgcgcatgggctaacattctagaaactcatcaccatcgaaacaaaccgaactggagacaaagtgatcctgccaaatggatggatccaatcctgggtccctgggaaatagctaaactctttcttcctgatttgggaggacatgctgatgtaaagagtgcggacgacatggacatcactggtattttgaacctgatgtactggtgcaatcagtttaccatccctcagcccttgatcaaggaagtccgcgaaacacgaaacaacaagtgggtgcatgtgccaaagcttgagttaaccaatgctgacaagacagatgctttttacgccattgaaaacttgctgaaggatcctcaactagctccagatccagacgcacagaaggcccttaaagaaattgtgaatcttaaaagtgttacagacttacacagtatggaggctcaaattttggccgatttcaaagaaataatagataaagagattttaaacttgactctggagtccgagagaaacaaagagcaagtaaaccaactgaaacaacaacaggtgaatttggaaaaggctgtggaggacctggggcaaagaaacaacctcttagaacaattacacgtagtgtgggtctggaaacttctagtatatgtgttcggaagcctaattttaagtcttaaacatttcaggagagggattttgttgttatttctgttttggagcttctgtaacatcttagatgatgacaccctcattaaagacggatgtgctatcaaaagatatggtgatcactggaagcttaaatactttgacttcagtgattttgttacctcatccagaacagactttattgggagacaatggctgtatcgcgaaatggaagaagttatggagcacacaagcgcgcgaggtgttttactcattggaaaccctgggtctggcaagacggcttttgtttctaatttactttgttcaagaacatcaagcacatttattcacaaccgaatacttggatatcatttttgcatgcattctgacaaagggacacaaaatgctgccaaatttgtcggaaatctggcaaacatggctgcttcgacgttccctgaatacggtgaaataattgtaggcgattcttttgtgcatagagtgttacacaacaactgcccacaagacccagagtggtgttttcaagagggaatccttacaccgctgaaaaacctgctgtaccaacccgaagaaccctggtacattattattgatgctttggacgaatgcactaccgatggaaaagcagaaatactaagcatgctcaagtccaaagtgcgacggcttccaaagtggctgaaactgattattacctcacgtaatataagcagtatcactacaagccttgatggtgtgcaaatactggagttgcggtcagacgacaagaggaatcaagacgatattgatgtgtatttatcgcttaaggtatttcctttaaaaccttcaattctatacagaacaaagacgttcttttcaatcacagacaacgacacaccggaaaagaggatcgtgaccagtcttgttgaaaaagcccaaggaaatttcttattcattaaggttgtgttagaatttctgtttgcaacaccagagagcattagctggactgagaacgttccaaaatcccttgacaacacttttcagttgtactttgaacgaaagtttggttcaggcgaatcattcagatctttacgcgagatttttgaagtcctagttgcggcgtataggccactgtctactcaagacatgcactttctccttaagcttgacaacccaaacctcgactttgagtatgatttaataccaaaactggaagaagtttcgttattcctgtggcatggatcagataacggacttgtaagaatttatcatgcatctttgtcagaatggctgaccagtgaaaccaataagggaaagttttattacgtaaaaaaacaaaatggacacagacgccttgcagaatactaccttcgaaacgcaaagacaaggacgaaacccttgacaccagaggacgttttctatttgacatgccatctcgtggagggaggatcaaacgatcatcaggtccacgaatttttgtcactcccttcaaagatggtcaacagatcggacgaagccaaaaccactgctctacactttagttcacgtgcagttgactcaagagtaactgagcttttgatgaagcatttccataacgtcgattgcttagataatgacaatcgcacgcctgccttcattgctgcaacttctggaaaccttaataatctcatcattctctttgaaagaggagcaaatcttaaccacacggtcaaatgtctagatttcaagctgtcaagtgatgcacaagcttctgtgcatgagtgtaagaggaggacatgtgaatattccttgttgcacactgctgcgcaagaaggtcacgtcgacatcgtagaatttctaatagaacaccatgtgaacgttacgaaagtaactggtgcaaacaacactgctgtgcagttagcagctgaaaatgggcattttgaggccgttgtaacgcttaacaaagctggtgtagttttggatgacgtctctttacatcacgccgcagctggaggccacagtcaagtagtggagtatctgctaaacgaaggcgtcagagatgattgcataaataacggtcctcttagagaattcagtcgtacaaagaatggttggcaggacaacaaagtacacgtatatgacaacgatcacttgaaaatgcgcgagacagcgctccatgctgccgtaaaaaagggacatctatctgtgattgcgactcttctacaacaccatgagactgctataaattgccctaatgttgcgggtagacgtcccctacacgaggccgttcatttaaacaactatcacgcgctgaaggcaatgctagctgcctcggaagtggatacttctgtacgatgtaacgctagcttgcgaacggtaggtaagctaggtggcataccgcgaaacgactgcccttgtggatttactgcattacatattgcagcaatgcgtggctatcacagcgttgccaaactgctcataacacaaaacgcagacttgaatgcgagagactgcaatggttcgactgcactccatatagcttcttgtcacgggatggtctctcttgtgacgcttctcgtcgacagtggagcaaacccaaatcaacggagcttcaatggttcaactccgcttcatagcgcagctgcctgttatgcgacagagagttttcgccctttgcttgacttaggtagcaacttttttgcaaaagacgagaagaaaatgacagcattacattacattgttaaggacttagaagttgctggcagagagtactttgctgatttatatgttggcaagccaaaagactggatagaagtagccacaaacgagaaagaaccctgggagcgaggagaacttaaatattcttggttgaatccaatgatgagtattaccaaaagttttgctgccagtgtccatgaatga

Transcript

evm.model.Ap1.2953

ATGGCATCCACAAGCACATCAGGGACATTTGGACAAATGGCTAAATCGGAATACAGAAACTGGCTTGCTCTCGGCCATGCCTTAACAACCGTGCTTTGTCAAGGTCTTCGTCCGTTCATTACCCGAGAGATGGAGACCTTCCATAGGAATGTATCAGCGAGAATTGCTGGACCCTGCATGTGTGTCCATGTCCCGAGAAGAAGACCAAACGAGTATCACGACATGACTACGTGCGCATGGGCTAACATTCTAGAAACTCATCACCATCGAAACAAACCGAACTGGAGACAAAGTGATCCTGCCAAATGGATGGATCCAATCCTGGGTCCCTGGGAAATAGCTAAACTCTTTCTTCCTGATTTGGGAGGACATGCTGATGTAAAGAGTGCGGACGACATGGACATCACTGGTATTTTGAACCTGATGTACTGGTGCAATCAGTTTACCATCCCTCAGCCCTTGATCAAGGAAGTCCGCGAAACACGAAACAACAAGTGGGTGCATGTGCCAAAGCTTGAGTTAACCAATGCTGACAAGACAGATGCTTTTTACGCCATTGAAAACTTGCTGAAGGATCCTCAACTAGCTCCAGATCCAGACGCACAGAAGGCCCTTAAAGAAATTGTGAATCTTAAAAGTGTTACAGACTTACACAGTATGGAGGCTCAAATTTTGGCCGATTTCAAAGAAATAATAGATAAAGAGATTTTAAACTTGACTCTGGAGTCCGAGAGAAACAAAGAGCAAGTAAACCAACTGAAACAACAACAGGTGAATTTGGAAAAGGCTGTGGAGGACCTGGGGCAAAGAAACAACCTCTTAGAACAATTACACGTAGTGTGGGTCTGGAAACTTCTAGTATATGTGTTCGGAAGCCTAATTTTAAGTCTTAAACATTTCAGGAGAGGGATTTTGTTGTTATTTCTGTTTTGGAGCTTCTGTAACATCTTAGATGATGACACCCTCATTAAAGACGGATGTGCTATCAAAAGATATGGTGATCACTGGAAGCTTAAATACTTTGACTTCAGTGATTTTGTTACCTCATCCAGAACAGACTTTATTGGGAGACAATGGCTGTATCGCGAAATGGAAGAAGTTATGGAGCACACAAGCGCGCGAGGTGTTTTACTCATTGGAAACCCTGGGTCTGGCAAGACGGCTTTTGTTTCTAATTTACTTTGTTCAAGAACATCAAGCACATTTATTCACAACCGAATACTTGGATATCATTTTTGCATGCATTCTGACAAAGGGACACAAAATGCTGCCAAATTTGTCGGAAATCTGGCAAACATGGCTGCTTCGACGTTCCCTGAATACGGTGAAATAATTGTAGGCGATTCTTTTGTGCATAGAGTGTTACACAACAACTGCCCACAAGACCCAGAGTGGTGTTTTCAAGAGGGAATCCTTACACCGCTGAAAAACCTGCTGTACCAACCCGAAGAACCCTGGTACATTATTATTGATGCTTTGGACGAATGCACTACCGATGGAAAAGCAGAAATACTAAGCATGCTCAAGTCCAAAGTGCGACGGCTTCCAAAGTGGCTGAAACTGATTATTACCTCACGTAATATAAGCAGTATCACTACAAGCCTTGATGGTGTGCAAATACTGGAGTTGCGGTCAGACGACAAGAGGAATCAAGACGATATTGATGTGTATTTATCGCTTAAGGTATTTCCTTTAAAACCTTCAATTCTATACAGAACAAAGACGTTCTTTTCAATCACAGACAACGACACACCGGAAAAGAGGATCGTGACCAGTCTTGTTGAAAAAGCCCAAGGAAATTTCTTATTCATTAAGGTTGTGTTAGAATTTCTGTTTGCAACACCAGAGAGCATTAGCTGGACTGAGAACGTTCCAAAATCCCTTGACAACACTTTTCAGTTGTACTTTGAACGAAAGTTTGGTTCAGGCGAATCATTCAGATCTTTACGCGAGATTTTTGAAGTCCTAGTTGCGGCGTATAGGCCACTGTCTACTCAAGACATGCACTTTCTCCTTAAGCTTGACAACCCAAACCTCGACTTTGAGTATGATTTAATACCAAAACTGGAAGAAGTTTCGTTATTCCTGTGGCATGGATCAGATAACGGACTTGTAAGAATTTATCATGCATCTTTGTCAGAATGGCTGACCAGTGAAACCAATAAGGGAAAGTTTTATTACGTAAAAAAACAAAATGGACACAGACGCCTTGCAGAATACTACCTTCGAAACGCAAAGACAAGGACGAAACCCTTGACACCAGAGGACGTTTTCTATTTGACATGCCATCTCGTGGAGGGAGGATCAAACGATCATCAGGTCCACGAATTTTTGTCACTCCCTTCAAAGATGGTCAACAGATCGGACGAAGCCAAAACCACTGCTCTACACTTTAGTTCACGTGCAGTTGACTCAAGAGTAACTGAGCTTTTGATGAAGCATTTCCATAACGTCGATTGCTTAGATAATGACAATCGCACGCCTGCCTTCATTGCTGCAACTTCTGGAAACCTTAATAATCTCATCATTCTCTTTGAAAGAGGAGCAAATCTTAACCACACGGTCAAATGTCTAGATTTCAAGCTGTCAAGTGATGCACAAGCTTCTGTGCATGAGTGTAAGAGGAGGACATGTGAATATTCCTTGTTGCACACTGCTGCGCAAGAAGGTCACGTCGACATCGTAGAATTTCTAATAGAACACCATGTGAACGTTACGAAAGTAACTGGTGCAAACAACACTGCTGTGCAGTTAGCAGCTGAAAATGGGCATTTTGAGGCCGTTGTAACGCTTAACAAAGCTGGTGTAGTTTTGGATGACGTCTCTTTACATCACGCCGCAGCTGGAGGCCACAGTCAAGTAGTGGAGTATCTGCTAAACGAAGGCGTCAGAGATGATTGCATAAATAACGGTCCTCTTAGAGAATTCAGTCGTACAAAGAATGGTTGGCAGGACAACAAAGTACACGTATATGACAACGATCACTTGAAAATGCGCGAGACAGCGCTCCATGCTGCCGTAAAAAAGGGACATCTATCTGTGATTGCGACTCTTCTACAACACCATGAGACTGCTATAAATTGCCCTAATGTTGCGGGTAGACGTCCCCTACACGAGGCCGTTCATTTAAACAACTATCACGCGCTGAAGGCAATGCTAGCTGCCTCGGAAGTGGATACTTCTGTACGATGTAACGCTAGCTTGCGAACGGTAGGTAAGCTAGGTGGCATACCGCGAAACGACTGCCCTTGTGGATTTACTGCATTACATATTGCAGCAATGCGTGGCTATCACAGCGTTGCCAAACTGCTCATAACACAAAACGCAGACTTGAATGCGAGAGACTGCAATGGTTCGACTGCACTCCATATAGCTTCTTGTCACGGGATGGTCTCTCTTGTGACGCTTCTCGTCGACAGTGGAGCAAACCCAAATCAACGGAGCTTCAATGGTTCAACTCCGCTTCATAGCGCAGCTGCCTGTTATGCGACAGAGAGTTTTCGCCCTTTGCTTGACTTAGGTAGCAACTTTTTTGCAAAAGACGAGAAGAAAATGACAGCATTACATTACATTGTTAAGGACTTAGAAGTTGCTGGCAGAGAGTACTTTGCTGATTTATATGTTGGCAAGCCAAAAGACTGGATAGAAGTAGCCACAAACGAGAAAGAACCCTGGGAGCGAGGAGAACTTAAATATTCTTGGTTGAATCCAATGATGAGTATTACCAAAAGTTTTGCTGCCAGTGTCCATGAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULJ7	Ankyrin repeat domain-containing protein 50 OS=Homo sapiens OX=9606 GN=ANKRD50 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000627 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15112 all species →	DUF4559	Domain of unknown function (DUF4559)	Family	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027897 all species →	Family	Protein of unknown function DUF4559	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24203 all species →	ANKYRIN REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.2953.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.