Genomic Location: Ap1:30518664...30539263
NR annotation: XP_020627688.1, ribonuclease 3-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.2968.1.5f15e294 |
| Transcript |
| evm.model.Ap1.2968.1.5f15e294 |
| Protein |
| evm.model.Ap1.2968.1.5f15e294 |
| UniProt accession | Description |
|---|---|
| Q9NRR4 | Ribonuclease 3 OS=Homo sapiens OX=9606 GN=DROSHA PE=1 SV=2 |
| Q5HZJ0 | Ribonuclease 3 OS=Mus musculus OX=10090 GN=Drosha PE=1 SV=1 |
| O01326 | Ribonuclease 3 OS=Caenorhabditis elegans OX=6239 GN=drsh-1 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002885 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14622 all species → | Ribonucleas_3_3 | Ribonuclease-III-like | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036389 all species → | Homologous_superfamily | Ribonuclease III, endonuclease domain superfamily | Interproscan |
| IPR000999 all species → | Domain | Ribonuclease III domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11207 all species → | RIBONUCLEASE III | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004525 all species → | Molecular Function | ribonuclease III activity | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0031053 all species → | Biological Process | primary miRNA processing | Interproscan |
| GO:0031054 all species → | Biological Process | pre-miRNA processing | Interproscan |
| GO:0070877 all species → | Cellular Component | microprocessor complex | Interproscan |
evm.model.Ap1.2968.1.5f15e294.Transcript abundance of evm.model.Ap1.2968.1.5f15e294 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
