Detailed information of evm.model.Ap1.2970 in Astrangia poculata

Genomic Location: Ap1:30551659...30561786
NR annotation: RMX56038.1, hypothetical protein pdam_00017464 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5R5Z6Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii OX=9601 GN=USP20 PE=2 SV=1
Q9Y2K6Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens OX=9606 GN=USP20 PE=1 SV=2
A7Z056Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus OX=9913 GN=USP20 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003770 (this species only)
Ubiquitin familyDUB|USP|USP · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06337
all species →		DUSPDUSP domainDomainInterproscan
PF00443
all species →		UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006615
all species →		DomainPeptidase C19, ubiquitin-specific peptidase, DUSP domainInterproscan
IPR035927
all species →		Homologous_superfamilyDUSP-like superfamilyInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR001394
all species →		DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR050185
all species →		FamilyUbiquitin carboxyl-terminal hydrolaseInterproscan
IPR028889
all species →		DomainUbiquitin specific protease domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21646
all species →		UBIQUITIN CARBOXYL-TERMINAL HYDROLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004843
all species →		Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579
all species →		Biological Processprotein deubiquitinationInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11848USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33EC:3.4.19.12
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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