Genomic Location: Ap1:30745770...30751834
NR annotation: XP_020603974.1, retinoic acid receptor RXR-alpha-B-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.2995 |
| Transcript |
| evm.model.Ap1.2995 |
| Protein |
| evm.model.Ap1.2995 |
| UniProt accession | Description |
|---|---|
| Q6DHP9 | Retinoic acid receptor RXR-gamma-B OS=Danio rerio OX=7955 GN=rxrgb PE=2 SV=1 |
| Q5BJR8 | Retinoic acid receptor RXR-gamma OS=Rattus norvegicus OX=10116 GN=Rxrg PE=1 SV=1 |
| Q90416 | Retinoic acid receptor RXR-gamma-A OS=Danio rerio OX=7955 GN=rxrga PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009417 (this species only) |
| Transcription factor family | ESR-like · all TF in this species |
| Transcription factor family | Miscellaneous · all TF in this species |
| Transcription factor family | NGFIB-like · all TF in this species |
| Transcription factor family | SF-like · all TF in this species |
| Transcription factor family | THR-like · all TF in this species |
| Transcription factor family | GCNF-like · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00105 all species → | zf-C4 | Zinc finger, C4 type (two domains) | Domain | Interproscan |
| PF00104 all species → | Hormone_recep | Ligand-binding domain of nuclear hormone receptor | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035500 all species → | Homologous_superfamily | Nuclear hormone receptor-like domain superfamily | Interproscan |
| IPR000536 all species → | Domain | Nuclear hormone receptor, ligand-binding domain | Interproscan |
| IPR001628 all species → | Domain | Zinc finger, nuclear hormone receptor-type | Interproscan |
| IPR013088 all species → | Homologous_superfamily | Zinc finger, NHR/GATA-type | Interproscan |
| IPR000003 all species → | Family | Retinoid X receptor/HNF4 | Interproscan |
| IPR001723 all species → | Family | Nuclear hormone receptor | Interproscan |
| IPR050200 all species → | Family | Nuclear hormone receptor family NR3 subfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48092 all species → | KNIRPS-RELATED PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0043565 all species → | Molecular Function | sequence-specific DNA binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003707 all species → | Molecular Function | nuclear steroid receptor activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0000790 all species → | Cellular Component | chromatin | Interproscan |
| GO:0004879 all species → | Molecular Function | nuclear receptor activity | Interproscan |
evm.model.Ap1.2995.Transcript abundance of evm.model.Ap1.2995 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
