Gene detail

Detailed information of evm.model.Ap1.3007 in Astrangia poculata

Genomic Location: Ap1:30895600...30907441
NR annotation: CAH3037572.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3007

atgccgcacacagtgagaatggagtcaaacaacagagtattcaccccaatacctttccagtccagggtgcccactccctaccctgtgattgactctgtttcttctgcaaaagattggtcaggtccttcgcaagaaagcagaatgttctctccgtcctggggatttgaatccaccatacatattggtcagcagtttcaaggtgcattgttacccatggcaactggtaattcacacactgttcatcattacgccttccctcaatcttggcaccatgctgtcacaccacaaaacttcagtggatataatctacacagcagtgatgtttggtatggggattctccattgatagaagggctcggagctgtagatgtaggaagtgaggttattgaacaagactctaaagttacatcaagtacagaagtatccccatggaaacctcagatgatgcttcctcctgtctcagagtttttgaatccatcccatggaaatttgaggtggcaaaatgaaagcatcagtccagtggaagcagcgccagcagatgagacgtgtcagcttaatgtacagctgcccagtgcgataaccgtcaaaccaaaaaaagccattacaagtactgataccaaagaagctcgaacacagacaccatggaaattaaagaagcaaaagtctgctccggaggcaaaaagtcaaaacaagagaaaaggaaagccacggaaatttgcagacccactcacttacatgaagcaaaagacagtgcaaaaagaaagagagagaaaaattagaaatgagctaacacatctcagcacaatgctgccatgcaatgagccaaaaaaccgccagccctcaaagaaggaaatacttgaaaatgctatcagccatatcatgcagttacaggaaaacatcagagaggcttacatgcagaaaggcttgaaaacagaagatctgaaagccatcttacaagacaacaatgtgctccgtcccagccaaacttgctttagtgtcattgatcaccaaaatgatgcagacctgatctcagaggattcaagtagccctcagagtcctccagaacttacaattgacgaaaacttcccgcctcgctcagtatcacctatctcagaattaagcaggcatggatcggtggagatgttgagcagccaaggatcggtagaaatgttaagcagccaaggatcggtggaaatgtttagcagccaaggatcggtggaaatggagaagatttccacaaaatctttgcaaaatggcaatatggaaacacatgttaatcatgtcaagaggccaatgaatgcctttcttttgtacagccagcagtaccgcaaggctttcaaggcgctgtatcctggcagagataatcgagagatcagcacaatccttgctaaacactggcgcgagatgaagcctgaacagaaggagccatacagggagaaagccagggagctcatgaaaagaacaagagagtcacatccagaattcaaatactgtgaagcaaaaaaagagacgggtgtagttgtagctgacagtgatggtgacaagcaagctggtcaggatcaaggctataggattggttctcacatattgcgacaaagaactgctgtgtacacaataacaggcggcaaaggattagagccatcacccaagaggagtaagtgtgaacaagatattccaccaaacatcaaagaaatggctgcactagggatgacagatcaaacaggaaccactgctgtcactgcattggaacccaagttatcccagatggtggttcatgagcctgcaggcattacccagaatcaaggtgaaagtgcttgtagtgaaaagcaaatcctagaatcacaccaaggtggaaagtttgtggaggttaacgtggaatggtatccaagcacttctgacatgtgggttcagtgtgaaacttgcaaaaaatggcacatgcttccagatgagagttatcctgctactttgcctgacaaatggttctgtcccctacatgtcaagtgtcaaggttcttgcaccagtgtttga

Transcript

evm.model.Ap1.3007

ATGCCGCACACAGTGAGAATGGAGTCAAACAACAGAGTATTCACCCCAATACCTTTCCAGTCCAGGGTGCCCACTCCCTACCCTGTGATTGACTCTGTTTCTTCTGCAAAAGATTGGTCAGGTCCTTCGCAAGAAAGCAGAATGTTCTCTCCGTCCTGGGGATTTGAATCCACCATACATATTGGTCAGCAGTTTCAAGGTGCATTGTTACCCATGGCAACTGGTAATTCACACACTGTTCATCATTACGCCTTCCCTCAATCTTGGCACCATGCTGTCACACCACAAAACTTCAGTGGATATAATCTACACAGCAGTGATGTTTGGTATGGGGATTCTCCATTGATAGAAGGGCTCGGAGCTGTAGATGTAGGAAGTGAGGTTATTGAACAAGACTCTAAAGTTACATCAAGTACAGAAGTATCCCCATGGAAACCTCAGATGATGCTTCCTCCTGTCTCAGAGTTTTTGAATCCATCCCATGGAAATTTGAGGTGGCAAAATGAAAGCATCAGTCCAGTGGAAGCAGCGCCAGCAGATGAGACGTGTCAGCTTAATGTACAGCTGCCCAGTGCGATAACCGTCAAACCAAAAAAAGCCATTACAAGTACTGATACCAAAGAAGCTCGAACACAGACACCATGGAAATTAAAGAAGCAAAAGTCTGCTCCGGAGGCAAAAAGTCAAAACAAGAGAAAAGGAAAGCCACGGAAATTTGCAGACCCACTCACTTACATGAAGCAAAAGACAGTGCAAAAAGAAAGAGAGAGAAAAATTAGAAATGAGCTAACACATCTCAGCACAATGCTGCCATGCAATGAGCCAAAAAACCGCCAGCCCTCAAAGAAGGAAATACTTGAAAATGCTATCAGCCATATCATGCAGTTACAGGAAAACATCAGAGAGGCTTACATGCAGAAAGGCTTGAAAACAGAAGATCTGAAAGCCATCTTACAAGACAACAATGTGCTCCGTCCCAGCCAAACTTGCTTTAGTGTCATTGATCACCAAAATGATGCAGACCTGATCTCAGAGGATTCAAGTAGCCCTCAGAGTCCTCCAGAACTTACAATTGACGAAAACTTCCCGCCTCGCTCAGTATCACCTATCTCAGAATTAAGCAGGCATGGATCGGTGGAGATGTTGAGCAGCCAAGGATCGGTAGAAATGTTAAGCAGCCAAGGATCGGTGGAAATGTTTAGCAGCCAAGGATCGGTGGAAATGGAGAAGATTTCCACAAAATCTTTGCAAAATGGCAATATGGAAACACATGTTAATCATGTCAAGAGGCCAATGAATGCCTTTCTTTTGTACAGCCAGCAGTACCGCAAGGCTTTCAAGGCGCTGTATCCTGGCAGAGATAATCGAGAGATCAGCACAATCCTTGCTAAACACTGGCGCGAGATGAAGCCTGAACAGAAGGAGCCATACAGGGAGAAAGCCAGGGAGCTCATGAAAAGAACAAGAGAGTCACATCCAGAATTCAAATACTGTGAAGCAAAAAAAGAGACGGGTGTAGTTGTAGCTGACAGTGATGGTGACAAGCAAGCTGGTCAGGATCAAGGCTATAGGATTGGTTCTCACATATTGCGACAAAGAACTGCTGTGTACACAATAACAGGCGGCAAAGGATTAGAGCCATCACCCAAGAGGAGTAAGTGTGAACAAGATATTCCACCAAACATCAAAGAAATGGCTGCACTAGGGATGACAGATCAAACAGGAACCACTGCTGTCACTGCATTGGAACCCAAGTTATCCCAGATGGTGGTTCATGAGCCTGCAGGCATTACCCAGAATCAAGGTGAAAGTGCTTGTAGTGAAAAGCAAATCCTAGAATCACACCAAGGTGGAAAGTTTGTGGAGGTTAACGTGGAATGGTATCCAAGCACTTCTGACATGTGGGTTCAGTGTGAAACTTGCAAAAAATGGCACATGCTTCCAGATGAGAGTTATCCTGCTACTTTGCCTGACAAATGGTTCTGTCCCCTACATGTCAAGTGTCAAGGTTCTTGCACCAGTGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9U1H0	Putative transcription factor capicua OS=Drosophila melanogaster OX=7227 GN=cic PE=1 SV=2
Q6VVD7	Transcription factor Sox-8 OS=Xenopus laevis OX=8355 GN=sox8 PE=2 SV=1
P57074	Transcription factor SOX-8 OS=Gallus gallus OX=9031 GN=SOX8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008832 (this species only)
Transcription factor family	bHLH · all TF in this species
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF07496 all species →	zf-CW	CW-type Zinc Finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011124 all species →	Domain	Zinc finger, CW-type	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR050140 all species →	Family	SRY-related HMG-box transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270 all species →	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.3007.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.