Gene detail

Detailed information of evm.model.Ap1.311 in Astrangia poculata

Genomic Location: Ap1:2848560...2855145
NR annotation: CAH3139095.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.311

atggaggaatcgcacaggaaagttttacagaaactgcgcttaaggatctcaagaaatattaatccaaggaaaataaccgaggcactctttactcgatccattttggacgaaaatgaccgcgagctagttctcgcacaaactacaactcaagacaaggcattgtacctcttggatttgctttctcggagtggtcccgaggcgttcgaggtgtttttgcaagctctctacggttgtggatgtgctttcttggtgaatgctattcaagctgagctctcaggtgaacaagctggagaaggcaatgaatggagaccaagatctgttggcctccctagaaaggttcccaaatttgttggaaggatggatgcttgtgaggaaatcacaaattcattggcagctgaaggggatgacatgatttgccttgtatccatagtagctccacctggattcggcaagacagctgtggcaaccaacataggtcacatgatgttagagaaaggaaaagatgtgctatacttttctctcagaaatatgtcgaaacttacttttgcagcggaacaaatgctgaaggaagtaacaggaattcatgcagaggaggatcctatctcacatctgacaagttatttaaattcccttcagcgtcaaactgtgctcattttggacaatgcagaagaccttcaaattggcgatgaggccaaatttgaggaatttcttgagaaaattggtcaacatgcacaaaacgttgtgacccttataacaagcaggaattcagtgtcgaaactggagctctttccttttggcaccaaacatgtgcctctaaaacctttaagggatgaagattcatcagcttatctcaagaatcatgtacctaatatctcaaaccaacatgcaagggaatttgccacagcctgccgtggggttcccctactgctgacaataacagcatcatttttgaataagaaaacagtggagccagttgatctgcatagaaagcttcaaaactgtccacacaatttcctcaaaacaaaggatgcaaaaattcaagaactttattctcatctgagagtgttttacaacaatttgcgacgtgaaatgaaggatgctcttgcttacttggcttcatttcccacatctttcacaaaagaagaagcaaaggatgtcttgtttccgaatgaggattatctggattttcaattattgcttgatgaccttgtacaacattcacttgtgcaacaagatgatgacaacaatcatttgtgctatagcttgcatccgctggtgcaagcgttttgcaagtcatccaggaacgatacatgcacagcgtacaatgcagcaatcagacttttttcgaagcattatctttcccttctgcaacgactgaatgatgacttcatcagcacggactgcaagattgtgattgacaagtatcatgttagcaagacaaacatttctcatgccctgttagcgtcaatagaagatcaagatgatcttttgaagcgtcacgggctcagcatttccaatgaatctgtgaacttcctggcaaaagtcctgcacatggatgagttcatgactttgtattctgaatgttctaaggtggcaaataagttgactgacaggaccctatacagtgagtgtcttgtttccattggattcaaacagctgtgttactatggttacaaggatgcctaccgcacagatgctaaaaggagccttcaagaggcacatgatcttcagaccagtctcaagatttctgacacagaatgcttgggtcactgcaagtgcaagctaggtctttgtagttttatttctggagacagaaagaaaggtatctcgctcattgcacaaggcattggtgtgcgaaagaggagggtgcgtactgagggatcaggaaaaatggaacgcatgcttttggctggtggcttttgtgacctggggatggcaatgtttatcagtggaaagtacagagctgctgtaaacatttggaagaacatctgtctgaggagatatcgagagctactgcgcacacaccctttcacagcatccttgctgcattacattggagatgcttaccagaaacttggtgatcccagacatgctgtcgcattcaagaaagagtctcttgaaatgaggaaatttttgttaggtgatgatcatttggacactgccagagcttactacggtgtgggctgcgctcttggagccctgggttccactgatgaagctctagagaacctaaacaaagctcttggagtccaagttcgtttccatgcctccaagcaagatatcgacaaaaccaaccaagaaataaatcgattgcgaggaaaaacaagagcagagtcgccatgccgaatgttacaacagatgtacattcaaaattgtgttgtaactggacacaatgttgctactctcgcaacatga

Transcript

evm.model.Ap1.311

ATGGAGGAATCGCACAGGAAAGTTTTACAGAAACTGCGCTTAAGGATCTCAAGAAATATTAATCCAAGGAAAATAACCGAGGCACTCTTTACTCGATCCATTTTGGACGAAAATGACCGCGAGCTAGTTCTCGCACAAACTACAACTCAAGACAAGGCATTGTACCTCTTGGATTTGCTTTCTCGGAGTGGTCCCGAGGCGTTCGAGGTGTTTTTGCAAGCTCTCTACGGTTGTGGATGTGCTTTCTTGGTGAATGCTATTCAAGCTGAGCTCTCAGGTGAACAAGCTGGAGAAGGCAATGAATGGAGACCAAGATCTGTTGGCCTCCCTAGAAAGGTTCCCAAATTTGTTGGAAGGATGGATGCTTGTGAGGAAATCACAAATTCATTGGCAGCTGAAGGGGATGACATGATTTGCCTTGTATCCATAGTAGCTCCACCTGGATTCGGCAAGACAGCTGTGGCAACCAACATAGGTCACATGATGTTAGAGAAAGGAAAAGATGTGCTATACTTTTCTCTCAGAAATATGTCGAAACTTACTTTTGCAGCGGAACAAATGCTGAAGGAAGTAACAGGAATTCATGCAGAGGAGGATCCTATCTCACATCTGACAAGTTATTTAAATTCCCTTCAGCGTCAAACTGTGCTCATTTTGGACAATGCAGAAGACCTTCAAATTGGCGATGAGGCCAAATTTGAGGAATTTCTTGAGAAAATTGGTCAACATGCACAAAACGTTGTGACCCTTATAACAAGCAGGAATTCAGTGTCGAAACTGGAGCTCTTTCCTTTTGGCACCAAACATGTGCCTCTAAAACCTTTAAGGGATGAAGATTCATCAGCTTATCTCAAGAATCATGTACCTAATATCTCAAACCAACATGCAAGGGAATTTGCCACAGCCTGCCGTGGGGTTCCCCTACTGCTGACAATAACAGCATCATTTTTGAATAAGAAAACAGTGGAGCCAGTTGATCTGCATAGAAAGCTTCAAAACTGTCCACACAATTTCCTCAAAACAAAGGATGCAAAAATTCAAGAACTTTATTCTCATCTGAGAGTGTTTTACAACAATTTGCGACGTGAAATGAAGGATGCTCTTGCTTACTTGGCTTCATTTCCCACATCTTTCACAAAAGAAGAAGCAAAGGATGTCTTGTTTCCGAATGAGGATTATCTGGATTTTCAATTATTGCTTGATGACCTTGTACAACATTCACTTGTGCAACAAGATGATGACAACAATCATTTGTGCTATAGCTTGCATCCGCTGGTGCAAGCGTTTTGCAAGTCATCCAGGAACGATACATGCACAGCGTACAATGCAGCAATCAGACTTTTTTCGAAGCATTATCTTTCCCTTCTGCAACGACTGAATGATGACTTCATCAGCACGGACTGCAAGATTGTGATTGACAAGTATCATGTTAGCAAGACAAACATTTCTCATGCCCTGTTAGCGTCAATAGAAGATCAAGATGATCTTTTGAAGCGTCACGGGCTCAGCATTTCCAATGAATCTGTGAACTTCCTGGCAAAAGTCCTGCACATGGATGAGTTCATGACTTTGTATTCTGAATGTTCTAAGGTGGCAAATAAGTTGACTGACAGGACCCTATACAGTGAGTGTCTTGTTTCCATTGGATTCAAACAGCTGTGTTACTATGGTTACAAGGATGCCTACCGCACAGATGCTAAAAGGAGCCTTCAAGAGGCACATGATCTTCAGACCAGTCTCAAGATTTCTGACACAGAATGCTTGGGTCACTGCAAGTGCAAGCTAGGTCTTTGTAGTTTTATTTCTGGAGACAGAAAGAAAGGTATCTCGCTCATTGCACAAGGCATTGGTGTGCGAAAGAGGAGGGTGCGTACTGAGGGATCAGGAAAAATGGAACGCATGCTTTTGGCTGGTGGCTTTTGTGACCTGGGGATGGCAATGTTTATCAGTGGAAAGTACAGAGCTGCTGTAAACATTTGGAAGAACATCTGTCTGAGGAGATATCGAGAGCTACTGCGCACACACCCTTTCACAGCATCCTTGCTGCATTACATTGGAGATGCTTACCAGAAACTTGGTGATCCCAGACATGCTGTCGCATTCAAGAAAGAGTCTCTTGAAATGAGGAAATTTTTGTTAGGTGATGATCATTTGGACACTGCCAGAGCTTACTACGGTGTGGGCTGCGCTCTTGGAGCCCTGGGTTCCACTGATGAAGCTCTAGAGAACCTAAACAAAGCTCTTGGAGTCCAAGTTCGTTTCCATGCCTCCAAGCAAGATATCGACAAAACCAACCAAGAAATAAATCGATTGCGAGGAAAAACAAGAGCAGAGTCGCCATGCCGAATGTTACAACAGATGTACATTCAAAATTGTGTTGTAACTGGACACAATGTTGCTACTCTCGCAACATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000307 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13401 all species →	AAA_22	AAA domain	Domain	Interproscan
PF00619 all species →	CARD	Caspase recruitment domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049945 all species →	Domain	ORC1/DEAH AAA+ ATPase domain	Interproscan
IPR001315 all species →	Domain	CARD domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691 all species →	REGULATOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.311.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.