Genomic Location: Ap1:31935791...31950799
NR annotation: KAJ7383244.1, hypothetical protein OS493_029647 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.3129 |
| Transcript |
| evm.model.Ap1.3129 |
| Protein |
| evm.model.Ap1.3129 |
| UniProt accession | Description |
|---|---|
| Q13753 | Laminin subunit gamma-2 OS=Homo sapiens OX=9606 GN=LAMC2 PE=1 SV=2 |
| Q8HZI9 | Laminin subunit gamma-2 OS=Equus caballus OX=9796 GN=LAMC2 PE=2 SV=1 |
| Q61092 | Laminin subunit gamma-2 OS=Mus musculus OX=10090 GN=Lamc2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002548 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00053 all species → | Laminin_EGF | Laminin EGF domain | Domain | Interproscan |
| PF02210 all species → | Laminin_G_2 | Laminin G domain | Domain | Interproscan |
| PF00052 all species → | Laminin_B | Laminin B (Domain IV) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050440 all species → | Family | Laminin/Netrin Extracellular Matrix | Interproscan |
| IPR000034 all species → | Domain | Laminin IV | Interproscan |
| IPR002049 all species → | Domain | Laminin-type EGF domain | Interproscan |
| IPR000152 all species → | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR001791 all species → | Domain | Laminin G domain | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10574 all species → | NETRIN/LAMININ-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005604 all species → | Cellular Component | basement membrane | Interproscan |
| GO:0008045 all species → | Biological Process | motor neuron axon guidance | Interproscan |
| GO:0009887 all species → | Biological Process | animal organ morphogenesis | Interproscan |
| GO:0009888 all species → | Biological Process | tissue development | Interproscan |
| GO:0016358 all species → | Biological Process | dendrite development | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
evm.model.Ap1.3129.Transcript abundance of evm.model.Ap1.3129 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
