Gene detail

Detailed information of evm.model.Ap1.3160 in Astrangia poculata

Genomic Location: Ap1:32263120...32282039
NR annotation: KAJ7370133.1, hypothetical protein OS493_034062 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3160

atggctcctcgatttctttttattttgttctttttagcagctgtttgttaccaatgtaaatgcgccattggaaaaaggctaggaaagtttatcaagcactacgaacctctgtactacgatccttctgagttgcacacaattcatcggagagccgttgaaagtcgatcgcatggaaagttcacgttttctgcgtttggaaaatttcaccagctaaatttgcggcctgatagaaaattatttacaggagatgcaagaattctctctggcgatggaaagccttttccatttgatcgcgatgccgtggtacgaggtaaagtagagggtcatccaggttccgacatttacggtgttattgacaaagatgatggattccatggaaagatattgagtggaagcgaaaactattacgtggatccgtcttcttggtactttgatgagaagcaggattttccatctgtcatctacaaggacgaagacctagacgatcaggattttgctgatgccaagcaaagagtgccctccgttccaattccagaacgaacacggcgttcgcgcgcagaccaagaccgatcccgcgctcgaagacaaactcaagcagaacttaggaaaagcgcctgcactctcggcctctacgccgataactttttcaccaaattgtacggcagcaaaacaaaagccatcttccaacttgtcaaacaagtgcaggcggctcagattatctacacgaaccagttcaatgaaacgaattacttcagtccatatggaataacattccgcgtcaaatccgtcgttgtcttcgatgaaaccgatgacccactacccaacaatcttcccgcccaagtaaaggacagtaatgtcggtatagacacattattagatctcttctcaagtatcgaccacagtggtgtttgtgaagccttcttgttcactgatcgcgattttgagggcgggaatttgggtctcgcttggatcggagaccctgatggcagtgcggcgggcggaatttgcgacaaatttgccgattatgggggagggaaaaaacgaagttacaatactggtgttgtgacattgaagctttatggacgactcgtacctcctagggtctcagaaataacgtttgcacacgagcttgggcatggatttggctctcagcatgatccagacacagcgcaatgttccccaggaggtgctgaaggaaactacatcatgtccgacaaagcaacatctggcatcaagcctaacaatgaccgattttccatctgcagtaaagacagcatcaagaaaaatatcaatagacatcgttctaaggacagtacctgctttatcagagctgacgagccaatatgtggaaacaagattgtggaaagaggtgaacagtgcgactgcggagacacagaaacctgtactgaggattgctgtgaaccggccagtacagatcctagtaagccaagagtcaatcagtgcaaactgaaatcaggaaagatttgcagcccaagccaaggtccatgttgtggtacccagtgtaattatgagggaccagctgtgttatgtgctgctgcgacagactgcactaaaaatacaacttgcagtggccactcattcagctgcgacacaccagaggctaagccaaacgggacttcttgtgatggaggacggcgtctatgctatgcaggacaatgttctacatctgtttgctacagttatggtctagaagagtgttcatgtacagccgaggaagaactttgtgatctgtgctgtaaagagaaagggggagagtgcatttcagcaaagagtttgtctcagctggacgatgaacagcagtctttgaagctggttcctgggtcaccttgtgatgacttgaatggatactgtgatgtgtttgctgtttgtcgccgagttgacatggctggccctctattgcgactcaagcaacagttcttcaccgttgaaggcctcaaggaaacagtaaagaagtactggtgggccatcatgcttggtacaattgcatttgctgtctttgttggccttcttgtctttttgtgctcacggtacactccaagcagcaatcctcacaaagaggccaagaaacctgccaagacacttccaggtcgcaagaagagaaatcccccacagcgcccagggcaacagggtatagaaatggagccacgtgcttga

Transcript

evm.model.Ap1.3160

ATGGCTCCTCGATTTCTTTTTATTTTGTTCTTTTTAGCAGCTGTTTGTTACCAATGTAAATGCGCCATTGGAAAAAGGCTAGGAAAGTTTATCAAGCACTACGAACCTCTGTACTACGATCCTTCTGAGTTGCACACAATTCATCGGAGAGCCGTTGAAAGTCGATCGCATGGAAAGTTCACGTTTTCTGCGTTTGGAAAATTTCACCAGCTAAATTTGCGGCCTGATAGAAAATTATTTACAGGAGATGCAAGAATTCTCTCTGGCGATGGAAAGCCTTTTCCATTTGATCGCGATGCCGTGGTACGAGGTAAAGTAGAGGGTCATCCAGGTTCCGACATTTACGGTGTTATTGACAAAGATGATGGATTCCATGGAAAGATATTGAGTGGAAGCGAAAACTATTACGTGGATCCGTCTTCTTGGTACTTTGATGAGAAGCAGGATTTTCCATCTGTCATCTACAAGGACGAAGACCTAGACGATCAGGATTTTGCTGATGCCAAGCAAAGAGTGCCCTCCGTTCCAATTCCAGAACGAACACGGCGTTCGCGCGCAGACCAAGACCGATCCCGCGCTCGAAGACAAACTCAAGCAGAACTTAGGAAAAGCGCCTGCACTCTCGGCCTCTACGCCGATAACTTTTTCACCAAATTGTACGGCAGCAAAACAAAAGCCATCTTCCAACTTGTCAAACAAGTGCAGGCGGCTCAGATTATCTACACGAACCAGTTCAATGAAACGAATTACTTCAGTCCATATGGAATAACATTCCGCGTCAAATCCGTCGTTGTCTTCGATGAAACCGATGACCCACTACCCAACAATCTTCCCGCCCAAGTAAAGGACAGTAATGTCGGTATAGACACATTATTAGATCTCTTCTCAAGTATCGACCACAGTGGTGTTTGTGAAGCCTTCTTGTTCACTGATCGCGATTTTGAGGGCGGGAATTTGGGTCTCGCTTGGATCGGAGACCCTGATGGCAGTGCGGCGGGCGGAATTTGCGACAAATTTGCCGATTATGGGGGAGGGAAAAAACGAAGTTACAATACTGGTGTTGTGACATTGAAGCTTTATGGACGACTCGTACCTCCTAGGGTCTCAGAAATAACGTTTGCACACGAGCTTGGGCATGGATTTGGCTCTCAGCATGATCCAGACACAGCGCAATGTTCCCCAGGAGGTGCTGAAGGAAACTACATCATGTCCGACAAAGCAACATCTGGCATCAAGCCTAACAATGACCGATTTTCCATCTGCAGTAAAGACAGCATCAAGAAAAATATCAATAGACATCGTTCTAAGGACAGTACCTGCTTTATCAGAGCTGACGAGCCAATATGTGGAAACAAGATTGTGGAAAGAGGTGAACAGTGCGACTGCGGAGACACAGAAACCTGTACTGAGGATTGCTGTGAACCGGCCAGTACAGATCCTAGTAAGCCAAGAGTCAATCAGTGCAAACTGAAATCAGGAAAGATTTGCAGCCCAAGCCAAGGTCCATGTTGTGGTACCCAGTGTAATTATGAGGGACCAGCTGTGTTATGTGCTGCTGCGACAGACTGCACTAAAAATACAACTTGCAGTGGCCACTCATTCAGCTGCGACACACCAGAGGCTAAGCCAAACGGGACTTCTTGTGATGGAGGACGGCGTCTATGCTATGCAGGACAATGTTCTACATCTGTTTGCTACAGTTATGGTCTAGAAGAGTGTTCATGTACAGCCGAGGAAGAACTTTGTGATCTGTGCTGTAAAGAGAAAGGGGGAGAGTGCATTTCAGCAAAGAGTTTGTCTCAGCTGGACGATGAACAGCAGTCTTTGAAGCTGGTTCCTGGGTCACCTTGTGATGACTTGAATGGATACTGTGATGTGTTTGCTGTTTGTCGCCGAGTTGACATGGCTGGCCCTCTATTGCGACTCAAGCAACAGTTCTTCACCGTTGAAGGCCTCAAGGAAACAGTAAAGAAGTACTGGTGGGCCATCATGCTTGGTACAATTGCATTTGCTGTCTTTGTTGGCCTTCTTGTCTTTTTGTGCTCACGGTACACTCCAAGCAGCAATCCTCACAAAGAGGCCAAGAAACCTGCCAAGACACTTCCAGGTCGCAAGAAGAGAAATCCCCCACAGCGCCCAGGGCAACAGGGTATAGAAATGGAGCCACGTGCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O77633	Disintegrin and metalloproteinase domain-containing protein 10 OS=Sus scrofa OX=9823 GN=ADAM10 PE=2 SV=2
Q10741	Disintegrin and metalloproteinase domain-containing protein 10 OS=Bos taurus OX=9913 GN=ADAM10 PE=1 SV=1
O35598	Disintegrin and metalloproteinase domain-containing protein 10 OS=Mus musculus OX=10090 GN=Adam10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000695 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21299 all species →	ADAM10_Cys-rich	ADAM10, cysteine-rich domain	Domain	Interproscan
PF13688 all species →	Reprolysin_5	Metallo-peptidase family M12	Family	Interproscan
PF00200 all species →	Disintegrin	Disintegrin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR036436 all species →	Homologous_superfamily	Disintegrin domain superfamily	Interproscan
IPR049038 all species →	Domain	ADAM10, cysteine-rich domain	Interproscan
IPR001762 all species →	Domain	Disintegrin domain	Interproscan
IPR051489 all species →	Family	Disintegrin and Metalloproteinase Domain-Containing	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45702 all species →	ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006509 all species →	Biological Process	membrane protein ectodomain proteolysis	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06704	ADAM10, CD156c; disintegrin and metalloproteinase domain-containing protein 10	EC:3.4.24.81	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.