Gene detail

Detailed information of evm.model.Ap1.3194 in Astrangia poculata

Genomic Location: Ap1:32501636...32519708
NR annotation: XP_027042394.1, far upstream element-binding protein 3-like isoform X2 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3194

atggcggacgcaatgcaagctttcaacagcgttccaccaccgccagcggctcctgtagacccaaattcagcctttgccgacgcattaaagagagcaaaggagattgcggcacgtatgggatcgagtagcgctgcggcagcagaggcttcggctgaacaagatttcagtaagaaaagaccgtatgaacaagacgttttaggtggtggtgaagaaattcctgcgaaaaaaccggcgacagaaggtactatggacggaaaagatcccaagtcaatagctatgcaagttgctgcaagtttagcacagagagctggacttggttcgttaattcaagaggatatgaagatccccaacagatttgttggattgattattggacgtggtggagaacagatcaataaactgcagtcagaaactggagccaaaatacaagttgccccagaccctcctcctggacagatagcacctccagatcgacatgtatccataaatggaacacaacaagcagtagaaaaagcaaggaatttgttaaacaggatatgcgaggaggggaagattccagaatctttgatgtcattgccagtcgttgctcctggtgaacaagtcattgaaatgatgataccagcaagcaaagttggacttattatcgggaaaggaggtgaaacaatcaaggctcttcaggagagagcacagtgccgaatgatgatggttcaggatgggccgtatctaaacgcaccagagaaacctcttcggataatgggagactccatgagagcgcaacgaggaagagaccttgttcaggacttacttaccgaaaaggagctagagcaaaacacacctgggatggacttcaaaggaaacaggaataacatggatagaaatcagcctggcatgcaacagttagaggttcctgttccgcgagatattgttggttttgttatcggcaagagtggtgaaacaatcaaaagaatacaagcagagactggagctaaagtgcagtttaatatgaaggataactcgaatgcacctgatcgaatggcatctgtccaaggtacaccagagcaggtgcagaaagttcagagcatgatccaagaaatagtagaacagtctcggcagcgaggtggcccacctccgaggggtccacctgcaaacatgcccggaataaacactgttgaatacccagtaccaggaaataaatgtggacttgttattggtaaaggaggggaaacaatcagagggattatcaacttgtgtggcgcacatgttgagttaaacagagctattcctgaaagctctccaacaaaaagcttcatcattcgaggtacagaccaacagatccaacatgctcaacaactaatcagggaaaagattgaaagtgagagaggaggcagaggaggtaattacaaccaaggccaaaactggaaccaacctggctggaaccaacagaaccaaccgcagcagcagcaacagcagcagcaagggggatggtcacagtataatcagtacggacagcagcagcaacagtatggccagcagccccagcaacagcaaccccagcagtatggccagcaacaacaacagccgtatggccaacaacagggtcctcagcaacagggtcaacagcaaggccaacagggtggtcaagctcaaggccaggcagattattctgcagcatgggcagcttattaccaacagctctaccagcagcaggctgcagcggcagggggacaagcagcaccaggtcaacctgcagccacaacaacaacctggtgtaccaggacaacaacaacagccgcagccacagggacccccagggggacagccaggggggcagccaggaggacccccagggggacagcagggacaacagtagtagaagcagtagttgtaaaggaggatgaagacgtgtcacaggaacgccgtattagcgaagaagatctgttttattccaaggatttttgtgtcctacacataatgattttgctatag

Transcript

evm.model.Ap1.3194

ATGGCGGACGCAATGCAAGCTTTCAACAGCGTTCCACCACCGCCAGCGGCTCCTGTAGACCCAAATTCAGCCTTTGCCGACGCATTAAAGAGAGCAAAGGAGATTGCGGCACGTATGGGATCGAGTAGCGCTGCGGCAGCAGAGGCTTCGGCTGAACAAGATTTCAGTAAGAAAAGACCGTATGAACAAGACGTTTTAGGTGGTGGTGAAGAAATTCCTGCGAAAAAACCGGCGACAGAAGGTACTATGGACGGAAAAGATCCCAAGTCAATAGCTATGCAAGTTGCTGCAAGTTTAGCACAGAGAGCTGGACTTGGTTCGTTAATTCAAGAGGATATGAAGATCCCCAACAGATTTGTTGGATTGATTATTGGACGTGGTGGAGAACAGATCAATAAACTGCAGTCAGAAACTGGAGCCAAAATACAAGTTGCCCCAGACCCTCCTCCTGGACAGATAGCACCTCCAGATCGACATGTATCCATAAATGGAACACAACAAGCAGTAGAAAAAGCAAGGAATTTGTTAAACAGGATATGCGAGGAGGGGAAGATTCCAGAATCTTTGATGTCATTGCCAGTCGTTGCTCCTGGTGAACAAGTCATTGAAATGATGATACCAGCAAGCAAAGTTGGACTTATTATCGGGAAAGGAGGTGAAACAATCAAGGCTCTTCAGGAGAGAGCACAGTGCCGAATGATGATGGTTCAGGATGGGCCGTATCTAAACGCACCAGAGAAACCTCTTCGGATAATGGGAGACTCCATGAGAGCGCAACGAGGAAGAGACCTTGTTCAGGACTTACTTACCGAAAAGGAGCTAGAGCAAAACACACCTGGGATGGACTTCAAAGGAAACAGGAATAACATGGATAGAAATCAGCCTGGCATGCAACAGTTAGAGGTTCCTGTTCCGCGAGATATTGTTGGTTTTGTTATCGGCAAGAGTGGTGAAACAATCAAAAGAATACAAGCAGAGACTGGAGCTAAAGTGCAGTTTAATATGAAGGATAACTCGAATGCACCTGATCGAATGGCATCTGTCCAAGGTACACCAGAGCAGGTGCAGAAAGTTCAGAGCATGATCCAAGAAATAGTAGAACAGTCTCGGCAGCGAGGTGGCCCACCTCCGAGGGGTCCACCTGCAAACATGCCCGGAATAAACACTGTTGAATACCCAGTACCAGGAAATAAATGTGGACTTGTTATTGGTAAAGGAGGGGAAACAATCAGAGGGATTATCAACTTGTGTGGCGCACATGTTGAGTTAAACAGAGCTATTCCTGAAAGCTCTCCAACAAAAAGCTTCATCATTCGAGGTACAGACCAACAGATCCAACATGCTCAACAACTAATCAGGGAAAAGATTGAAAGTGAGAGAGGAGGCAGAGGAGGTAATTACAACCAAGGCCAAAACTGGAACCAACCTGGCTGGAACCAACAGAACCAACCGCAGCAGCAGCAACAGCAGCAGCAAGGGGGATGGTCACAGTATAATCAGTACGGACAGCAGCAGCAACAGTATGGCCAGCAGCCCCAGCAACAGCAACCCCAGCAGTATGGCCAGCAACAACAACAGCCGTATGGCCAACAACAGGGTCCTCAGCAACAGGGTCAACAGCAAGGCCAACAGGGTGGTCAAGCTCAAGGCCAGGCAGATTATTCTGCAGCATGGGCAGCTTATTACCAACAGCTCTACCAGCAGCAGGCTGCAGCGGCAGGGGGACAAGCAGCACCAGGTCAACCTGCAGCCACAACAACAACCTGGTGTACCAGGACAACAACAACAGCCGCAGCCACAGGGACCCCCAGGGGGACAGCCAGGGGGGCAGCCAGGAGGACCCCCAGGGGGACAGCAGGGACAACAGTAGTAGAAGCAGTAGTTGTAAAGGAGGATGAAGACGTGTCACAGGAACGCCGTATTAGCGAAGAAGATCTGTTTTATTCCAAGGATTTTTGTGTCCTACACATAATGATTTTGCTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91WJ8	Far upstream element-binding protein 1 OS=Mus musculus OX=10090 GN=Fubp1 PE=1 SV=1
Q96AE4	Far upstream element-binding protein 1 OS=Homo sapiens OX=9606 GN=FUBP1 PE=1 SV=3
Q32PX7	Far upstream element-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Fubp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10288 all species →	KH DOMAIN CONTAINING RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13210	FUBP; far upstream element-binding protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.