Gene detail

Detailed information of evm.model.Ap1.3238 in Astrangia poculata

Genomic Location: Ap1:33049236...33071816
NR annotation: XP_020626461.1, ATP-dependent RNA helicase A-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3238

atggcggcttcccagttcaaaaacttcttgtatgctttttgtggaaaacgtaaagtgagacccatttatacagaaagaccggctacgcagggaacgtttaagtttcagatccagatagagggatttgattatgtgggtcttggaagtgctacaaacaagaaagatgctgaaactaatgcagccaaggatttttgtggcttcttgattggagcaggaattattcctcctgactcatttccagatgatttatttggagagggaccaacagcacagcaacagcaacaacagcttccatcatctgtggcaccagcgcctcatgcacacctcatgccaaatcaaaaccagcagccaggaccagcccagggtaaacccttcccttcacaaccacaaccgctcatgatgcaacaaggtggttcagggtctggtgctaaccaaatggatggctggagtggagctgggcaaagggattaccactacagtttgtacaataaaagaaagtttgaagaggctgaagatgtagatctgaatgcacatctccatggaaactggacaatggcaaatgccaagtctcggctgcaccaatatctgcagcaaaacaggcttcctgctgatttcaagtactcatcaggtggtccagatcacaacagacactttgtggcagaattgtccatatttgtgaagtctcacaggcgaactattagtgctcgtgaacatgcttccacaaagaaacaagctgctcaaaacacttcactaagccttgttcgacaattattccacatgggagccttggaagctgctgagccaggccaacttcaaccaaaaagaaagaaagttgatgagattgaaccatatgatgttggaatcagccctgacatggaacagcaagtttccagcctactgcaaagtcttgaaattcagccagtccctcagcctcaagacccaagtcaagctgtatccattgtccttccgcctggaatggttaaatttaaagatgctcagcatgaagcaggctctggtatagtggagtggactccaccaaatatgaactggaatccatggataaaccagcctatgattattgaaggagccgaggagtatcaagaacctattccaacaagccaggattacctgaatgagtacagagagaagcatcaaaatgttgacatgtacaagcgcatgttggagcagcgcagccaactgccagtgtttcagtacaagtcggcactgattgaagctatcaagaagaacagggttgttgttgtgaagggtgcaacaggctgtggaaaaactactcaggttccccagtacattttggatgattaccttgaggcaggctatggtgctgactgttgtattgcagtcacccagcccagacgtataagtgctgtgagtgtagcagaaagagtagcaagtgagagagctgagatactgggcagcagtgttgggtactcagtcaggtttgatactgttctaccaagaagccatgcctccatgctcttctgtacagtaggggttcttctcagaaaacttgaaaacggtcttcatggcatttctcatgttgttgtggatgagattcatgagcgtgacataaatactgattttgttttggtcatcttacgtgacatgattcaagcttaccccaacttgcgagttgttcttatgtcagccaccattgacactcagatgttcacagaatactttggaaactgtcccattgtggaaatagaaggaagatcatttcctgtccaagcacaactgagtgaaaaggaaatgtcttttgagcttgtggaggctcttctgaactacatatctggccttaatatccctggagctgtcctcatatttctaccaggatggaacttaatatttgcattgcacaaatatctgaagatgcatccacaatttgggatcagtagcaagtatcgtctgcttcctctgcattctcagatcccaagagaagatcagcggagagtgtttgaacctgtaccagaaggagttacaaagatcattctttctaccaacattgctgagacaagcatcaccattgatgatgttgtgttcgtcattgattcctgcaaagctaaagtgaagttattcacgtcacacaacaacatgacaaattacgccactgtgtgggcttccaggactaacatggaacagaggcgtggccgggcaggcagagtgaggcctgggtttgcttttcatctgtgcagtagaacacgtgcttcaagacttgctgagcacgccacaccagagattctacgtacacctcttcacgaactggctttaaccatcaagcttcttaagcttggagacattggagagttcttgaacaaagccattgaacctcctcctctggatgctgtagcagaatcagttgcactgttgaaagatatggaggctttggatagaaacttgaacctaacaccgcttggctatttgctggccaagttacctattgaaccacggcttggaaagatgatcattctgggatgcatcttttattgtggagatgccatgtgtaccatagctgccagcaccagttttcctgagccgtttgaaacaccatctgaccgcaagagactgggctgggtgcacaagcagtttgcagggtcacgtcacagtgaccacattgcgttactcagtgcgtaccaggcgtgggaagacgccaggtcggtggaagacgaatctgcagagtttcacttttgtgacagtcatcagttaaacatgtcaactctgcgcatgacatcggaggccaagcttcagcttaaagatcttctttgcaatgctggatttccagacgaatgcatgcaccctcagccattcaactacagcggtcctgactccaaactggatatggttgtagcactgctttgtcttggtatgtaccccaatgtctgtgttcaccgcgagaaacgaaaagtgctgacaacagaaggcaaggctgcactgatccacaaatcttcagtgaactgctccaacagagagcagacttttccgtctcctttcttcgtgtttggagaaaagattcgtacccgcgctgtctcgtgtaaacagatgaccatggtcaatccactccagctgcttatgttcagtcagagtaaagtggaatctgaaaatggaatcgttagaatggatgactggttgcagttccgttttccacatcaacaagccgccatggttgtagccctgcgccatgcgctggattaccttctagttcacgctgccacaactccacccaagatagctgaaccaagtcatacagatgagagaatattaaatgttattaaatcactatcacgagctaacgccggaagctttggcgtgaatcgcagtggtggacaccaatttcaaccacgaggaagacctcctccagggttgatgcacagaggagggcgtggtgggccccctcccagacgcggctaccaaggccccaggcattaccgcggaaacaatcaaggcggtggatttcgcggcggtggattccgaagtggaccccctcgaggagggtttcgcggatttcgcggtggacgttattag

Transcript

evm.model.Ap1.3238

ATGGCGGCTTCCCAGTTCAAAAACTTCTTGTATGCTTTTTGTGGAAAACGTAAAGTGAGACCCATTTATACAGAAAGACCGGCTACGCAGGGAACGTTTAAGTTTCAGATCCAGATAGAGGGATTTGATTATGTGGGTCTTGGAAGTGCTACAAACAAGAAAGATGCTGAAACTAATGCAGCCAAGGATTTTTGTGGCTTCTTGATTGGAGCAGGAATTATTCCTCCTGACTCATTTCCAGATGATTTATTTGGAGAGGGACCAACAGCACAGCAACAGCAACAACAGCTTCCATCATCTGTGGCACCAGCGCCTCATGCACACCTCATGCCAAATCAAAACCAGCAGCCAGGACCAGCCCAGGGTAAACCCTTCCCTTCACAACCACAACCGCTCATGATGCAACAAGGTGGTTCAGGGTCTGGTGCTAACCAAATGGATGGCTGGAGTGGAGCTGGGCAAAGGGATTACCACTACAGTTTGTACAATAAAAGAAAGTTTGAAGAGGCTGAAGATGTAGATCTGAATGCACATCTCCATGGAAACTGGACAATGGCAAATGCCAAGTCTCGGCTGCACCAATATCTGCAGCAAAACAGGCTTCCTGCTGATTTCAAGTACTCATCAGGTGGTCCAGATCACAACAGACACTTTGTGGCAGAATTGTCCATATTTGTGAAGTCTCACAGGCGAACTATTAGTGCTCGTGAACATGCTTCCACAAAGAAACAAGCTGCTCAAAACACTTCACTAAGCCTTGTTCGACAATTATTCCACATGGGAGCCTTGGAAGCTGCTGAGCCAGGCCAACTTCAACCAAAAAGAAAGAAAGTTGATGAGATTGAACCATATGATGTTGGAATCAGCCCTGACATGGAACAGCAAGTTTCCAGCCTACTGCAAAGTCTTGAAATTCAGCCAGTCCCTCAGCCTCAAGACCCAAGTCAAGCTGTATCCATTGTCCTTCCGCCTGGAATGGTTAAATTTAAAGATGCTCAGCATGAAGCAGGCTCTGGTATAGTGGAGTGGACTCCACCAAATATGAACTGGAATCCATGGATAAACCAGCCTATGATTATTGAAGGAGCCGAGGAGTATCAAGAACCTATTCCAACAAGCCAGGATTACCTGAATGAGTACAGAGAGAAGCATCAAAATGTTGACATGTACAAGCGCATGTTGGAGCAGCGCAGCCAACTGCCAGTGTTTCAGTACAAGTCGGCACTGATTGAAGCTATCAAGAAGAACAGGGTTGTTGTTGTGAAGGGTGCAACAGGCTGTGGAAAAACTACTCAGGTTCCCCAGTACATTTTGGATGATTACCTTGAGGCAGGCTATGGTGCTGACTGTTGTATTGCAGTCACCCAGCCCAGACGTATAAGTGCTGTGAGTGTAGCAGAAAGAGTAGCAAGTGAGAGAGCTGAGATACTGGGCAGCAGTGTTGGGTACTCAGTCAGGTTTGATACTGTTCTACCAAGAAGCCATGCCTCCATGCTCTTCTGTACAGTAGGGGTTCTTCTCAGAAAACTTGAAAACGGTCTTCATGGCATTTCTCATGTTGTTGTGGATGAGATTCATGAGCGTGACATAAATACTGATTTTGTTTTGGTCATCTTACGTGACATGATTCAAGCTTACCCCAACTTGCGAGTTGTTCTTATGTCAGCCACCATTGACACTCAGATGTTCACAGAATACTTTGGAAACTGTCCCATTGTGGAAATAGAAGGAAGATCATTTCCTGTCCAAGCACAACTGAGTGAAAAGGAAATGTCTTTTGAGCTTGTGGAGGCTCTTCTGAACTACATATCTGGCCTTAATATCCCTGGAGCTGTCCTCATATTTCTACCAGGATGGAACTTAATATTTGCATTGCACAAATATCTGAAGATGCATCCACAATTTGGGATCAGTAGCAAGTATCGTCTGCTTCCTCTGCATTCTCAGATCCCAAGAGAAGATCAGCGGAGAGTGTTTGAACCTGTACCAGAAGGAGTTACAAAGATCATTCTTTCTACCAACATTGCTGAGACAAGCATCACCATTGATGATGTTGTGTTCGTCATTGATTCCTGCAAAGCTAAAGTGAAGTTATTCACGTCACACAACAACATGACAAATTACGCCACTGTGTGGGCTTCCAGGACTAACATGGAACAGAGGCGTGGCCGGGCAGGCAGAGTGAGGCCTGGGTTTGCTTTTCATCTGTGCAGTAGAACACGTGCTTCAAGACTTGCTGAGCACGCCACACCAGAGATTCTACGTACACCTCTTCACGAACTGGCTTTAACCATCAAGCTTCTTAAGCTTGGAGACATTGGAGAGTTCTTGAACAAAGCCATTGAACCTCCTCCTCTGGATGCTGTAGCAGAATCAGTTGCACTGTTGAAAGATATGGAGGCTTTGGATAGAAACTTGAACCTAACACCGCTTGGCTATTTGCTGGCCAAGTTACCTATTGAACCACGGCTTGGAAAGATGATCATTCTGGGATGCATCTTTTATTGTGGAGATGCCATGTGTACCATAGCTGCCAGCACCAGTTTTCCTGAGCCGTTTGAAACACCATCTGACCGCAAGAGACTGGGCTGGGTGCACAAGCAGTTTGCAGGGTCACGTCACAGTGACCACATTGCGTTACTCAGTGCGTACCAGGCGTGGGAAGACGCCAGGTCGGTGGAAGACGAATCTGCAGAGTTTCACTTTTGTGACAGTCATCAGTTAAACATGTCAACTCTGCGCATGACATCGGAGGCCAAGCTTCAGCTTAAAGATCTTCTTTGCAATGCTGGATTTCCAGACGAATGCATGCACCCTCAGCCATTCAACTACAGCGGTCCTGACTCCAAACTGGATATGGTTGTAGCACTGCTTTGTCTTGGTATGTACCCCAATGTCTGTGTTCACCGCGAGAAACGAAAAGTGCTGACAACAGAAGGCAAGGCTGCACTGATCCACAAATCTTCAGTGAACTGCTCCAACAGAGAGCAGACTTTTCCGTCTCCTTTCTTCGTGTTTGGAGAAAAGATTCGTACCCGCGCTGTCTCGTGTAAACAGATGACCATGGTCAATCCACTCCAGCTGCTTATGTTCAGTCAGAGTAAAGTGGAATCTGAAAATGGAATCGTTAGAATGGATGACTGGTTGCAGTTCCGTTTTCCACATCAACAAGCCGCCATGGTTGTAGCCCTGCGCCATGCGCTGGATTACCTTCTAGTTCACGCTGCCACAACTCCACCCAAGATAGCTGAACCAAGTCATACAGATGAGAGAATATTAAATGTTATTAAATCACTATCACGAGCTAACGCCGGAAGCTTTGGCGTGAATCGCAGTGGTGGACACCAATTTCAACCACGAGGAAGACCTCCTCCAGGGTTGATGCACAGAGGAGGGCGTGGTGGGCCCCCTCCCAGACGCGGCTACCAAGGCCCCAGGCATTACCGCGGAAACAATCAAGGCGGTGGATTTCGCGGCGGTGGATTCCGAAGTGGACCCCCTCGAGGAGGGTTTCGCGGATTTCGCGGTGGACGTTATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28141	ATP-dependent RNA helicase A OS=Bos taurus OX=9913 GN=DHX9 PE=1 SV=1
Q08211	ATP-dependent RNA helicase A OS=Homo sapiens OX=9606 GN=DHX9 PE=1 SV=4
Q5R874	ATP-dependent RNA helicase A OS=Pongo abelii OX=9601 GN=DHX9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000674 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF07717 all species →	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF04408 all species →	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011709 all species →	Domain	DEAD-box helicase, OB fold	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR044445 all species →	Domain	DHX9, first double-stranded RNA binding domain	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan
IPR048333 all species →	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044446 all species →	Domain	DHX9, second double-stranded RNA binding domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR002464 all species →	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050684 all species →	Biological Process	regulation of mRNA processing	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13184	DHX9; ATP-dependent RNA/DNA helicase DHX9	EC:5.6.2.6 EC:5.6.2.4	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.