Gene detail

Detailed information of evm.model.Ap1.3262 in Astrangia poculata

Genomic Location: Ap1:33350118...33359304
NR annotation: XP_022780257.1, mitochondrial-processing peptidase subunit alpha-like isoform X1 [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

evm.model.Ap1.3262

GAAGGTAAAGAAATGGCCGGACGAAGTTTCGTGCCAATATTCCAAGGCTGTAGATCCCTAAATGCTTTTAGAAGAACCTGCAGACATGCTCTACAAAAGAGACTTTTAAGTAATGGCGCGATCCCTCCGCTTAACGAACCTTTACCAAATCTGCCTGCTCCACCGCCGGACATGGTCGGCGGAGCAGACTGGCAAAACCGGCACGATCATGTAACTCACGTTACCACGCTTGAAAATGGCATCAAAGTGGCTTCAGAAGACTCATTTGGACAGTTCTCCACAGTTGGTGTGGTGATTGATGCAGGCTCCAGGTATGAAGTTGACTACCCTGCAGGATTATCACATTTACTGGAGAAACTGGCTTTTCAGAGTACAGTAGAATTTCAAAGTAATGACGATATTACACAGGAGCTTGAAAAATTTGGAGGCATGGCAGATTGTTCTTCATTCAGAGATGCCATTATTTATGGAACATCTTGCTTTACAAGTGGCCTGCCCTCAGTGATGAAAGTTTTGTCTGAAGCTGTGCTTCAACCCAAATTAACAGACCAAGAGATTGAAGAACAAAAAATGGTAGTCCAATTTGAACTTGAAAACTTGGAAATGAGACCGGATCCCGAGCCTGTCCTCACAGACATGATACATGCTGCAGCTTTTCGTGATAACACTGTTGGCTTACCCAAGTTGTGTCCGCCAGAAAACATAGGAAAGTTCAATTCTTCAATTTTGCTAGACTACATAAAAAGATACTATCAGCCATCTAGAATGGTAATAGCTGGAGTAAATGTCGACCACCAGCATTTAATAGACCTAACAAAAGACCACTTTGTTAACAAACCACCTGTGTGGCACAGAGAAGGAGAGGAAACTGAGAGCCCAGATAGATCTATAGCACAGTACACTGGAGGCATTGTTAAGGACCACAGAACTGAACCGAGGATCAACCCTGGCCCCACACCTCTCCCAGATTTGGCCCACCTCTCAATAGGAGTAGAGACATGTCATTATGATGATCCAGACTTTTTTGCATTCACTGTTCTCAACACAATGATGGGTGGTGGAGGTTCTTTTTCAGCTGGAGGACCAGGGAAGGGCATGTACTCTCGGCTTTACTTGAATGTTTTAAACCAATATCATTGGATTTATGCCGCTACTGCATACCATCATAGCTATTCAGACAGTGGTTTGTTCTGCATCCATGGAAGTTCTCACCCTAGTCAATTGCGTGACCTCATGCGAGTGATTGTCAAGGAATACTTTGCTCTTGTCAATGGTCCAATAAATGAGGTTGAGGTAGCAAGGGCTAAAAAACAGCTCCAGTCAATGTTGATGATGAATCTAGAATCAAGAGTTATTGTGTTTGAGGACATAGGAAGGCAAGTTCTTGGGCTCCACAAAAGGAAATCTGCTCAGGAACTATTTCAGAGCATTGAAAACGTGACAGTCGATGATATAAAACGCGTCAGTACCCGGATGTTAGCGTCCAAACCCTCCGTTGCAGCACTTGGTAACCTGGCCAACCTACCCAAATTTGAAGAGGTTGAACGCGCGTTTGGTAATCGGGGCAACCTCAGTGGCGCATCTCGCTTTTTCCTTTTTAGGAATTGATGGCGCGAAAAGCGTTACGTTCTAACCTTCATTTCAACTCACCACTTCATGCAATCAAGCAATCAAATATCCACGCATGTAGAATGATGAACAACAATTTCCGGTCGCTGGTTGTAAACATGGTGGGAACATTTCAAAAAGTAACAGAACAACACCTGACATTCAATTTTCTAAAACGTACTTTTTTGTGAATTTTCACATCAGCTCGTAAATGGACAGTGGAGAGAATTATGCATGAAATGCGAGTTTTAAAAGCAGACAAGAAGAAGACATTACTCTTTTTCCCAGAGTGTCACTATATTTTAAGAGTTGTTGATCCTGTTTATATCTCACAACTGAGGCCCTGCCAGGGGGGTGGGGATCCCGTGTCGTTTGTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DC61	Mitochondrial-processing peptidase subunit alpha OS=Mus musculus OX=10090 GN=Pmpca PE=1 SV=1
Q5R513	Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii OX=9601 GN=PMPCA PE=2 SV=2
Q10713	Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens OX=9606 GN=PMPCA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006780 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05193 all species →	Peptidase_M16_C	Peptidase M16 inactive domain	Domain	Interproscan
PF00675 all species →	Peptidase_M16	Insulinase (Peptidase family M16)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007863 all species →	Domain	Peptidase M16, C-terminal	Interproscan
IPR011765 all species →	Domain	Peptidase M16, N-terminal	Interproscan
IPR011249 all species →	Homologous_superfamily	Metalloenzyme, LuxS/M16 peptidase-like	Interproscan
IPR001431 all species →	Binding_site	Peptidase M16, zinc-binding site	Interproscan
IPR050361 all species →	Family	Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase Complex	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11851 all species →	METALLOPROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006627 all species →	Biological Process	protein processing involved in protein targeting to mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01412	PMPCA, MAS2; mitochondrial-processing peptidase subunit alpha	EC:3.4.24.64	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.