Genomic Location: Ap1:33464244...33480321
NR annotation: XP_020612404.1, laminin subunit gamma-1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.3273 |
| Transcript |
| evm.model.Ap1.3273 |
| Protein |
| evm.model.Ap1.3273 |
| UniProt accession | Description |
|---|---|
| P02468 | Laminin subunit gamma-1 OS=Mus musculus OX=10090 GN=Lamc1 PE=1 SV=2 |
| P11047 | Laminin subunit gamma-1 OS=Homo sapiens OX=9606 GN=LAMC1 PE=1 SV=3 |
| A0JP86 | Laminin subunit gamma-1 OS=Xenopus tropicalis OX=8364 GN=lamc1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001810 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00055 all species → | Laminin_N | Laminin N-terminal (Domain VI) | Domain | Interproscan |
| PF00053 all species → | Laminin_EGF | Laminin EGF domain | Domain | Interproscan |
| PF00052 all species → | Laminin_B | Laminin B (Domain IV) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002049 all species → | Domain | Laminin-type EGF domain | Interproscan |
| IPR000034 all species → | Domain | Laminin IV | Interproscan |
| IPR008211 all species → | Domain | Laminin, N-terminal | Interproscan |
| IPR050440 all species → | Family | Laminin/Netrin Extracellular Matrix | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10574 all species → | NETRIN/LAMININ-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009887 all species → | Biological Process | animal organ morphogenesis | Interproscan |
| GO:0009888 all species → | Biological Process | tissue development | Interproscan |
evm.model.Ap1.3273.Transcript abundance of evm.model.Ap1.3273 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
