Gene detail

Detailed information of evm.model.Ap1.3277 in Astrangia poculata

Genomic Location: Ap1:33510406...33522983
NR annotation: KAJ7334378.1, hypothetical protein OS493_014689 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3277

atggctccaaggaaacagatcatcgcgatcatatgtttgatcgtggcggcgtttttcgcggaggtgtcaggcgaatgttcttcggctggagtatgcatccccggtcctgtgaatgcagcacgtttagtgaatcatacggtaaatgctacaagtacatgcggcgatccaccggctcaatattgccgtctcaagccccaaaaccagtgtttcatgtgcaacggaagtactcatacggtggagaaaatgactgacgataagcttagcacgttctggcagtccgttacgtggtgggaatggtacaagaataacaactacacggatgagcctttgatggttaacgtgtcgatttcgttcgacaagagttatgccatcactggagaaattcgtgtcatcttcaagtctcctcgacccttcaaaatgattctcgaaaggtctgcggataaagggatgacatggtcgcctttgcagtactatgcagacgactgcaacgaacgattcaacatgccaagcacgtcaatcgaaagcataacgcacggtgactttggccttctctgcgtggaagattacagctcttcgacccctcaagaaaatggcatagtgttgttcgatttcttgaagcgctacaccaagcctgccttctggaacagaacacttcaagagtatttcacggccactgatcttcggttacagctgttatatcctggcacagatcggctggaaaacgtggacaataaggtagagaacatctttaatcagtactattactccatagcagacctacgagtcactgcccgttgccagtgtcatgggcacggagagttttgtgattaccccgaatttaaaggcaagaactgtgactgtatgcacaacaccgaaggtgaagattgcgaacggtgtaagccactgtataataacaagacttggatgccggccacttcagacagtgaacctaatccatgcgaagcatgtcagtgctacaatcattcaaaaagctgccattataataagactctggaccatggtatctgtgacgactgtgaccacaacaccacagggatgttctgtgagcagtgtgtggacaaattctatcgtaacatgaacaagccccttaatgattctgaagtgtgtctaccctgtgactgctacatgtttggaatcacaaacaatgggtcatgtaatcaaacaacaggacaatgtgaatgcaagcaaaatgtgacaggtcggcagtgtgatggttgtgaggatactttctggggctttcgactccctcctaaaggggattgtcgagaatgcaagtgtaatgataatggcacaagaaatggaagcttaagctgtaatcaacattcaggccaatgtccttgcaagaaaaatattcatcaacttacatgctctgagtgcagagatggtttctactcatttcctaaagctgtcgacgtggactgtcttcagtgtgactgtgattatggtggaagtgttgaggagatctgtgaaaaagagaatggaacttgcctgtgccgaagccatattcaaggagagcactgtactgaagttagtaagggctactatgttgcctccttttatcatctgaaatatgaagctgaagatgccatgggaagttatgttgccacgtcttacttcactggagtggaccaagtatttactggcagaggctacggaaagattggactcaatcagtttatttctttcactgtcaatccacccacaagctttagtgacttctacatagttattcgctatactagtgttgaggatgctaatgcaactctgaggctctccgtaagttcctgcattggatcagattgtaatgcaacaaacaattttaccatttctcacctacctcatggagctgggttagcttggagatcgcaagaagctgttcctttccttggaggcagagtgtatcatttgaacttgacgtatgtcagtggaatgtaccctaactcaacaatcgaaatagactcattaattttgcttccaaatgtgagagatgtcaggatttatgaaattgctcaagacactggctccgttcatggtatggcacttcaacaaattgaagattgttggaataattctaccaccattgctgggtcacaaaatagctctgacatctgtaggaatgtcactttctctaccatggctgaagtatttgatggagctattgcttgttcatgcaacagcacaggaactgaaaatggcacaacctgtcgccagctaggaggtcagtgtcactgcaagccaggagtgacaggacagtcatgtgaccgttgcttaccaggatacttcaacttcactgatagtggatgtacagcttgtgaatgcagtgacctgggatcctcagatcttgtttgtgatcctgtgactggccaatgtccgtgtaggcctggtgttataacaaggacctgcagcaggtgtgatgcagactactatggttttcacacgggacagggatgcgttgagtgcaaatgtaatgctagtggctctgcagatcttcaatgtgaccggaatggagtctgcctatgtaagaacagcaccactggcacaaaatgtgacatgtgtcgtgaaaacttcttcaactttacatcagagggatgtcagccctgtaactgcaatgagggaggttctagcacactgcagtgccaccttaacacagggatctgtacatgcaaggccaatgctgaaggcaacaaatgtgagagatgcaagaatggaacatacaacagcgaccccaacaatccagatgggtgttctccttgtttctgttttggtcgatctgatgtgtgctcctcagctgcaggctttgttaaaacctatatgaaagccaatttctcattccattcaggcttccacattgagccttctggggactatagcagtttggataatggtgattcctttaacatcaaatttacatctgacagttatgtcaaactgattttcctggacaactttaaaggtaaccagctcccttcttatggtcagttgtttaagatgaccatgaattatgctgatgtggacagtttgaatgcgacttggaatgtcacactatcaaacaccaatggacaaacagcgtatttcaacatcgaacctcagccatccttgtcaaacaaagaatatcatgctagactgcatgaacactacaccctcaataacttaacagcctatgaactacagagtatcttggtggacattaaatctgttgaaattcatggaagtttcaaggccaatggatctgtcacaataaatgctaggttggtgtctgccactaaaggtgttggtgaagaagtgggatatgttgaaaactgtacgtgtccaaacaactacacagagctgtcatgtggattctgtaattcaggatatactcgccttgacccggataaaacacccaatgtcctcagctcctgcgtactgtgctcttgcactggccgttcacaagactgctttcctgagaatggcacatgctataactgtcgtatgggatctatgggtgaacactgtgagagatgtcagcctggggtggacaacacaactgattgtaggcggtgtacacctggattctttggtttaactccttcatctggtggctgcagagactgtgactgtgttcttcccaacacgatgtatggtaacagcagcgtgtgtaacgagaccactggccagtgcacctgtaaaccaagaattggtggcagaccatgtgaccgatgccatgaaaatgcttacaataccagcgaagggtgtgttgactgtcccgagtgctaccgccttatttacgtggaggtgaaaaagcttcgagtgagctcagccgccctagccgacacaatagatcgcctacgaaatggacacatcggagacgcttcattcgctcagcgactcactaactcagaaaacagcgttagtagtttgatgtctgatgcagaagaatctcgcaaaatcgaaacaaacgttacaaagcaaatcaaggagctcaacgagactctcaatcgtttggaggaagtgttggtgcaagaggtaacacctggtgtaaacgagctttcaagtaacttgactgctgttatacaggataggaacagaacagaggagctcattcagctgattcgtgatgctgttaattacagcaataatcttctgaatgtgtccatcgatccgtctgtccgcgaggctaagactatcagcaagtatcttagtgaactggtaccaaggttcactgcgctggcgtacaatttcactgcagcagcaacgcgtcagaatgaaacagcctacgacatccagggtaaagtagacaatgcgaactccgtgataggggaagcgcagagggtggctgagaatactgtaaaagagcaaaacgacctcaagagctttcttgataagctaagaatgcgcgttgatgttatacaagcctatggtgaaagcacgaacttcactgcatatgagatgtttgttaatgcatcgactgttttgttacgagccaatgataccatatcacaggtaatgttgctggatcccaacaatacggacaccgtcagtgagattgagacggcagcaatgcaagcaagaaaggaggcacaagaggttatctcaagagctcagaatctgacacagacgtattcaaatttgaccgcacaagttgagttagctgttgaagaggtggaatctttgatgcttcgagtggacaacgccgagtcaaccggacaagcaatacttatggaagcacgtagggccagacaagaagccatcgacgctgtacagcttgccaccaagaccctcgcagacgctgaagaaatgttacagattctgcagaattttgagtccaaggcacaagaagcacaggagtttgccgacctgtcgcttaaacgggccaaggaagctaacactactagctggaatgcgattcagtatgcccagggaatcaacgcttctcttcaagcaacgctgacagctgctaaacggggactgaaactagcacaggaagcaaggaatatttcattttatgagaatcaggctgtgtccattattcatgaagatgcaaacaaactttcccaagacgcaggccaatccaagtacacaacagggtattttagccaggtcgagcagaatgtcaccaatataaactcgtcctcacaagaacacatcaacgcatgcaaaggaaactattccaagttggcttctgatgctttgcgagatgcttattcagcgaagaacgaagcagacaaagctgatgctgctgcaaagaacttgaaagtaaacgtggaccgcgtggtgcaagaagctggtagactgcaagcggtgaacgtcacaaggctaagtgaactgaagaacgagatacagaggcttcgtacggagtttacacagaaaaatgtagcagacatcattacagaactgaaaaatgccaaagaggcgcaacagcaatttgtgttagaatatcaagaaaaagtcaggaaaaagcgggaggaaatcgctgaacttaaacaactttacgcgtcattatcatcagtgacatgtgaaagttcatcatga

Transcript

evm.model.Ap1.3277

ATGGCTCCAAGGAAACAGATCATCGCGATCATATGTTTGATCGTGGCGGCGTTTTTCGCGGAGGTGTCAGGCGAATGTTCTTCGGCTGGAGTATGCATCCCCGGTCCTGTGAATGCAGCACGTTTAGTGAATCATACGGTAAATGCTACAAGTACATGCGGCGATCCACCGGCTCAATATTGCCGTCTCAAGCCCCAAAACCAGTGTTTCATGTGCAACGGAAGTACTCATACGGTGGAGAAAATGACTGACGATAAGCTTAGCACGTTCTGGCAGTCCGTTACGTGGTGGGAATGGTACAAGAATAACAACTACACGGATGAGCCTTTGATGGTTAACGTGTCGATTTCGTTCGACAAGAGTTATGCCATCACTGGAGAAATTCGTGTCATCTTCAAGTCTCCTCGACCCTTCAAAATGATTCTCGAAAGGTCTGCGGATAAAGGGATGACATGGTCGCCTTTGCAGTACTATGCAGACGACTGCAACGAACGATTCAACATGCCAAGCACGTCAATCGAAAGCATAACGCACGGTGACTTTGGCCTTCTCTGCGTGGAAGATTACAGCTCTTCGACCCCTCAAGAAAATGGCATAGTGTTGTTCGATTTCTTGAAGCGCTACACCAAGCCTGCCTTCTGGAACAGAACACTTCAAGAGTATTTCACGGCCACTGATCTTCGGTTACAGCTGTTATATCCTGGCACAGATCGGCTGGAAAACGTGGACAATAAGGTAGAGAACATCTTTAATCAGTACTATTACTCCATAGCAGACCTACGAGTCACTGCCCGTTGCCAGTGTCATGGGCACGGAGAGTTTTGTGATTACCCCGAATTTAAAGGCAAGAACTGTGACTGTATGCACAACACCGAAGGTGAAGATTGCGAACGGTGTAAGCCACTGTATAATAACAAGACTTGGATGCCGGCCACTTCAGACAGTGAACCTAATCCATGCGAAGCATGTCAGTGCTACAATCATTCAAAAAGCTGCCATTATAATAAGACTCTGGACCATGGTATCTGTGACGACTGTGACCACAACACCACAGGGATGTTCTGTGAGCAGTGTGTGGACAAATTCTATCGTAACATGAACAAGCCCCTTAATGATTCTGAAGTGTGTCTACCCTGTGACTGCTACATGTTTGGAATCACAAACAATGGGTCATGTAATCAAACAACAGGACAATGTGAATGCAAGCAAAATGTGACAGGTCGGCAGTGTGATGGTTGTGAGGATACTTTCTGGGGCTTTCGACTCCCTCCTAAAGGGGATTGTCGAGAATGCAAGTGTAATGATAATGGCACAAGAAATGGAAGCTTAAGCTGTAATCAACATTCAGGCCAATGTCCTTGCAAGAAAAATATTCATCAACTTACATGCTCTGAGTGCAGAGATGGTTTCTACTCATTTCCTAAAGCTGTCGACGTGGACTGTCTTCAGTGTGACTGTGATTATGGTGGAAGTGTTGAGGAGATCTGTGAAAAAGAGAATGGAACTTGCCTGTGCCGAAGCCATATTCAAGGAGAGCACTGTACTGAAGTTAGTAAGGGCTACTATGTTGCCTCCTTTTATCATCTGAAATATGAAGCTGAAGATGCCATGGGAAGTTATGTTGCCACGTCTTACTTCACTGGAGTGGACCAAGTATTTACTGGCAGAGGCTACGGAAAGATTGGACTCAATCAGTTTATTTCTTTCACTGTCAATCCACCCACAAGCTTTAGTGACTTCTACATAGTTATTCGCTATACTAGTGTTGAGGATGCTAATGCAACTCTGAGGCTCTCCGTAAGTTCCTGCATTGGATCAGATTGTAATGCAACAAACAATTTTACCATTTCTCACCTACCTCATGGAGCTGGGTTAGCTTGGAGATCGCAAGAAGCTGTTCCTTTCCTTGGAGGCAGAGTGTATCATTTGAACTTGACGTATGTCAGTGGAATGTACCCTAACTCAACAATCGAAATAGACTCATTAATTTTGCTTCCAAATGTGAGAGATGTCAGGATTTATGAAATTGCTCAAGACACTGGCTCCGTTCATGGTATGGCACTTCAACAAATTGAAGATTGTTGGAATAATTCTACCACCATTGCTGGGTCACAAAATAGCTCTGACATCTGTAGGAATGTCACTTTCTCTACCATGGCTGAAGTATTTGATGGAGCTATTGCTTGTTCATGCAACAGCACAGGAACTGAAAATGGCACAACCTGTCGCCAGCTAGGAGGTCAGTGTCACTGCAAGCCAGGAGTGACAGGACAGTCATGTGACCGTTGCTTACCAGGATACTTCAACTTCACTGATAGTGGATGTACAGCTTGTGAATGCAGTGACCTGGGATCCTCAGATCTTGTTTGTGATCCTGTGACTGGCCAATGTCCGTGTAGGCCTGGTGTTATAACAAGGACCTGCAGCAGGTGTGATGCAGACTACTATGGTTTTCACACGGGACAGGGATGCGTTGAGTGCAAATGTAATGCTAGTGGCTCTGCAGATCTTCAATGTGACCGGAATGGAGTCTGCCTATGTAAGAACAGCACCACTGGCACAAAATGTGACATGTGTCGTGAAAACTTCTTCAACTTTACATCAGAGGGATGTCAGCCCTGTAACTGCAATGAGGGAGGTTCTAGCACACTGCAGTGCCACCTTAACACAGGGATCTGTACATGCAAGGCCAATGCTGAAGGCAACAAATGTGAGAGATGCAAGAATGGAACATACAACAGCGACCCCAACAATCCAGATGGGTGTTCTCCTTGTTTCTGTTTTGGTCGATCTGATGTGTGCTCCTCAGCTGCAGGCTTTGTTAAAACCTATATGAAAGCCAATTTCTCATTCCATTCAGGCTTCCACATTGAGCCTTCTGGGGACTATAGCAGTTTGGATAATGGTGATTCCTTTAACATCAAATTTACATCTGACAGTTATGTCAAACTGATTTTCCTGGACAACTTTAAAGGTAACCAGCTCCCTTCTTATGGTCAGTTGTTTAAGATGACCATGAATTATGCTGATGTGGACAGTTTGAATGCGACTTGGAATGTCACACTATCAAACACCAATGGACAAACAGCGTATTTCAACATCGAACCTCAGCCATCCTTGTCAAACAAAGAATATCATGCTAGACTGCATGAACACTACACCCTCAATAACTTAACAGCCTATGAACTACAGAGTATCTTGGTGGACATTAAATCTGTTGAAATTCATGGAAGTTTCAAGGCCAATGGATCTGTCACAATAAATGCTAGGTTGGTGTCTGCCACTAAAGGTGTTGGTGAAGAAGTGGGATATGTTGAAAACTGTACGTGTCCAAACAACTACACAGAGCTGTCATGTGGATTCTGTAATTCAGGATATACTCGCCTTGACCCGGATAAAACACCCAATGTCCTCAGCTCCTGCGTACTGTGCTCTTGCACTGGCCGTTCACAAGACTGCTTTCCTGAGAATGGCACATGCTATAACTGTCGTATGGGATCTATGGGTGAACACTGTGAGAGATGTCAGCCTGGGGTGGACAACACAACTGATTGTAGGCGGTGTACACCTGGATTCTTTGGTTTAACTCCTTCATCTGGTGGCTGCAGAGACTGTGACTGTGTTCTTCCCAACACGATGTATGGTAACAGCAGCGTGTGTAACGAGACCACTGGCCAGTGCACCTGTAAACCAAGAATTGGTGGCAGACCATGTGACCGATGCCATGAAAATGCTTACAATACCAGCGAAGGGTGTGTTGACTGTCCCGAGTGCTACCGCCTTATTTACGTGGAGGTGAAAAAGCTTCGAGTGAGCTCAGCCGCCCTAGCCGACACAATAGATCGCCTACGAAATGGACACATCGGAGACGCTTCATTCGCTCAGCGACTCACTAACTCAGAAAACAGCGTTAGTAGTTTGATGTCTGATGCAGAAGAATCTCGCAAAATCGAAACAAACGTTACAAAGCAAATCAAGGAGCTCAACGAGACTCTCAATCGTTTGGAGGAAGTGTTGGTGCAAGAGGTAACACCTGGTGTAAACGAGCTTTCAAGTAACTTGACTGCTGTTATACAGGATAGGAACAGAACAGAGGAGCTCATTCAGCTGATTCGTGATGCTGTTAATTACAGCAATAATCTTCTGAATGTGTCCATCGATCCGTCTGTCCGCGAGGCTAAGACTATCAGCAAGTATCTTAGTGAACTGGTACCAAGGTTCACTGCGCTGGCGTACAATTTCACTGCAGCAGCAACGCGTCAGAATGAAACAGCCTACGACATCCAGGGTAAAGTAGACAATGCGAACTCCGTGATAGGGGAAGCGCAGAGGGTGGCTGAGAATACTGTAAAAGAGCAAAACGACCTCAAGAGCTTTCTTGATAAGCTAAGAATGCGCGTTGATGTTATACAAGCCTATGGTGAAAGCACGAACTTCACTGCATATGAGATGTTTGTTAATGCATCGACTGTTTTGTTACGAGCCAATGATACCATATCACAGGTAATGTTGCTGGATCCCAACAATACGGACACCGTCAGTGAGATTGAGACGGCAGCAATGCAAGCAAGAAAGGAGGCACAAGAGGTTATCTCAAGAGCTCAGAATCTGACACAGACGTATTCAAATTTGACCGCACAAGTTGAGTTAGCTGTTGAAGAGGTGGAATCTTTGATGCTTCGAGTGGACAACGCCGAGTCAACCGGACAAGCAATACTTATGGAAGCACGTAGGGCCAGACAAGAAGCCATCGACGCTGTACAGCTTGCCACCAAGACCCTCGCAGACGCTGAAGAAATGTTACAGATTCTGCAGAATTTTGAGTCCAAGGCACAAGAAGCACAGGAGTTTGCCGACCTGTCGCTTAAACGGGCCAAGGAAGCTAACACTACTAGCTGGAATGCGATTCAGTATGCCCAGGGAATCAACGCTTCTCTTCAAGCAACGCTGACAGCTGCTAAACGGGGACTGAAACTAGCACAGGAAGCAAGGAATATTTCATTTTATGAGAATCAGGCTGTGTCCATTATTCATGAAGATGCAAACAAACTTTCCCAAGACGCAGGCCAATCCAAGTACACAACAGGGTATTTTAGCCAGGTCGAGCAGAATGTCACCAATATAAACTCGTCCTCACAAGAACACATCAACGCATGCAAAGGAAACTATTCCAAGTTGGCTTCTGATGCTTTGCGAGATGCTTATTCAGCGAAGAACGAAGCAGACAAAGCTGATGCTGCTGCAAAGAACTTGAAAGTAAACGTGGACCGCGTGGTGCAAGAAGCTGGTAGACTGCAAGCGGTGAACGTCACAAGGCTAAGTGAACTGAAGAACGAGATACAGAGGCTTCGTACGGAGTTTACACAGAAAAATGTAGCAGACATCATTACAGAACTGAAAAATGCCAAAGAGGCGCAACAGCAATTTGTGTTAGAATATCAAGAAAAAGTCAGGAAAAAGCGGGAGGAAATCGCTGAACTTAAACAACTTTACGCGTCATTATCATCAGTGACATGTGAAAGTTCATCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75445	Usherin OS=Homo sapiens OX=9606 GN=USH2A PE=1 SV=3
O09118	Netrin-1 OS=Mus musculus OX=10090 GN=Ntn1 PE=1 SV=3
Q924Z9	Netrin-1 OS=Rattus norvegicus OX=10116 GN=Ntn1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001807 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF00052 all species →	Laminin_B	Laminin B (Domain IV)	Domain	Interproscan
PF21199 all species →	LAMININ_IV_B	Laminin IV type B domain	Domain	Interproscan
PF00055 all species →	Laminin_N	Laminin N-terminal (Domain VI)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR013015 all species →	Domain	Laminin IV type B	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR008211 all species →	Domain	Laminin, N-terminal	Interproscan
IPR050440 all species →	Family	Laminin/Netrin Extracellular Matrix	Interproscan
IPR000034 all species →	Domain	Laminin IV	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10574 all species →	NETRIN/LAMININ-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0009888 all species →	Biological Process	tissue development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05636	LAMB1; laminin, beta 1	-	Toxoplasmosis	ko05145	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.