Gene detail

Detailed information of evm.model.Ap1.3287 in Astrangia poculata

Genomic Location: Ap1:33621936...33629156
NR annotation: CAH3029234.1, unnamed protein product [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3287

atggcggctttcttatgccaaccagctgtgcttcttctttttatcttgttttacaattctgttttgtcgcacggcacaaagaattctaaacgtcctcacattctgttcattcttgcggatgatcttggctggagcgatgtcggcttccatggctccgtcataaaaactcccaacatcgacaagctggccagtgaaggagtgatcttggataattactatgtacaaccactgtgtacaccaacaagatcagctctgatgactggaagtgatgatgatgatgatgatgatgatgacgacgatgatgatagactctgtgtcaccgaagattcttttggataccgattgcagcatggtgtaatacacgtggataatcctgttggattgccattagaatatagtattttgcctcaagaactgaaaaaagttggcaagtggcatcttggttcctacaagtggccttatgttcctacaagaagagggtttgacacattctttggattttggagtggatcagaggatcataacacttactcagttgaaggctttttagattttcgtgacggagaagagcctgcaagaaactggaatggcacttacgccatgtatgcctacacgaagaagatggaggagatagtgaagtcacacgatcccgcacagcctctgttcttgtacatggcattccagaacgttcatttcccagtagaagcacctcagcattatgttaataaatacagttttataaagaatgatctcagacgtcgttacgctggtatggtagacatcttggatgaggcagtgggaaacattaccaaggttttcacctcggcagggttgtggaatgacacgcttgttatcttcagtacggacaatggcggtttaccgagtgccggcgggtttaactggccacttcgtggaacaaaacacaccgtttgggagggaggggctagaggggccggatttgtctatggtaatttactggaacagaaaggtgtcagaaacaaagagctcttgcacgcgacggactggtacccaactcttatcaagctggcagtcccagcagctagctttgtagatgaccttagatcgttgagaacggttgaggcggtctttgtacggaaagaaggatttgatgcggcgtgggttctgaaaattgatcttgaggttgacgaaagagtcttccaagcatccaaatcactaaacgccttaaatcctgtgtatccgacttctactcgatctttcgtcaacctcaagatcatttttcagaacacacgccgcatcaaatccttctttccgtacaaagaccgcctcaaccgttctcaacgatctaaggtcatcgacaaagctagctgctgggactgtaacaaggccctcactaaatgcgaccatccgtcagctattgctggtcacataaaaaccaaatgggatcattttgaaaccctagcgttaggcaaaactgacctccactgcaaaattaaggagaccttatacattcaagaactacaaccttctttgaatgccaatgtcgccagtggaagctacgatcataaatatcccgaacctgttgacggttttgacgtatgggaggcaatcagctcaggaaaaccctcaccaagaaatgaagttcttattaacattgataccactcaagggtccgcgttgcgtgtggggcacatgaagatactgatgaacgtccccaatatcacgtggtttaagccacctgaactggaagagaggctctccgaacaaaagactgggtttcagttaaaaaaagatgatcgcaacagtgaacttaagtccattttgttgttggatcaaggcgaaaggatcgaagtagctctttacaatataaccgctgaccctgatgagcggaacgacttaagcagcaagtacccggatattgtacagaaactaaaggagagaatggcttattacgttaagagcacagtcacaccactcaatcagccaccggatccccaggcaagagaaaacgctaaaaagactggctgctggggaccttggcaagattga

Transcript

evm.model.Ap1.3287

ATGGCGGCTTTCTTATGCCAACCAGCTGTGCTTCTTCTTTTTATCTTGTTTTACAATTCTGTTTTGTCGCACGGCACAAAGAATTCTAAACGTCCTCACATTCTGTTCATTCTTGCGGATGATCTTGGCTGGAGCGATGTCGGCTTCCATGGCTCCGTCATAAAAACTCCCAACATCGACAAGCTGGCCAGTGAAGGAGTGATCTTGGATAATTACTATGTACAACCACTGTGTACACCAACAAGATCAGCTCTGATGACTGGAAGTGATGATGATGATGATGATGATGATGACGACGATGATGATAGACTCTGTGTCACCGAAGATTCTTTTGGATACCGATTGCAGCATGGTGTAATACACGTGGATAATCCTGTTGGATTGCCATTAGAATATAGTATTTTGCCTCAAGAACTGAAAAAAGTTGGCAAGTGGCATCTTGGTTCCTACAAGTGGCCTTATGTTCCTACAAGAAGAGGGTTTGACACATTCTTTGGATTTTGGAGTGGATCAGAGGATCATAACACTTACTCAGTTGAAGGCTTTTTAGATTTTCGTGACGGAGAAGAGCCTGCAAGAAACTGGAATGGCACTTACGCCATGTATGCCTACACGAAGAAGATGGAGGAGATAGTGAAGTCACACGATCCCGCACAGCCTCTGTTCTTGTACATGGCATTCCAGAACGTTCATTTCCCAGTAGAAGCACCTCAGCATTATGTTAATAAATACAGTTTTATAAAGAATGATCTCAGACGTCGTTACGCTGGTATGGTAGACATCTTGGATGAGGCAGTGGGAAACATTACCAAGGTTTTCACCTCGGCAGGGTTGTGGAATGACACGCTTGTTATCTTCAGTACGGACAATGGCGGTTTACCGAGTGCCGGCGGGTTTAACTGGCCACTTCGTGGAACAAAACACACCGTTTGGGAGGGAGGGGCTAGAGGGGCCGGATTTGTCTATGGTAATTTACTGGAACAGAAAGGTGTCAGAAACAAAGAGCTCTTGCACGCGACGGACTGGTACCCAACTCTTATCAAGCTGGCAGTCCCAGCAGCTAGCTTTGTAGATGACCTTAGATCGTTGAGAACGGTTGAGGCGGTCTTTGTACGGAAAGAAGGATTTGATGCGGCGTGGGTTCTGAAAATTGATCTTGAGGTTGACGAAAGAGTCTTCCAAGCATCCAAATCACTAAACGCCTTAAATCCTGTGTATCCGACTTCTACTCGATCTTTCGTCAACCTCAAGATCATTTTTCAGAACACACGCCGCATCAAATCCTTCTTTCCGTACAAAGACCGCCTCAACCGTTCTCAACGATCTAAGGTCATCGACAAAGCTAGCTGCTGGGACTGTAACAAGGCCCTCACTAAATGCGACCATCCGTCAGCTATTGCTGGTCACATAAAAACCAAATGGGATCATTTTGAAACCCTAGCGTTAGGCAAAACTGACCTCCACTGCAAAATTAAGGAGACCTTATACATTCAAGAACTACAACCTTCTTTGAATGCCAATGTCGCCAGTGGAAGCTACGATCATAAATATCCCGAACCTGTTGACGGTTTTGACGTATGGGAGGCAATCAGCTCAGGAAAACCCTCACCAAGAAATGAAGTTCTTATTAACATTGATACCACTCAAGGGTCCGCGTTGCGTGTGGGGCACATGAAGATACTGATGAACGTCCCCAATATCACGTGGTTTAAGCCACCTGAACTGGAAGAGAGGCTCTCCGAACAAAAGACTGGGTTTCAGTTAAAAAAAGATGATCGCAACAGTGAACTTAAGTCCATTTTGTTGTTGGATCAAGGCGAAAGGATCGAAGTAGCTCTTTACAATATAACCGCTGACCCTGATGAGCGGAACGACTTAAGCAGCAAGTACCCGGATATTGTACAGAAACTAAAGGAGAGAATGGCTTATTACGTTAAGAGCACAGTCACACCACTCAATCAGCCACCGGATCCCCAGGCAAGAGAAAACGCTAAAAAGACTGGCTGCTGGGGACCTTGGCAAGATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50430	Arylsulfatase B OS=Rattus norvegicus OX=10116 GN=Arsb PE=2 SV=2
P15848	Arylsulfatase B OS=Homo sapiens OX=9606 GN=ARSB PE=1 SV=1
P50429	Arylsulfatase B OS=Mus musculus OX=10090 GN=Arsb PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000167 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00884 all species →	Sulfatase	Sulfatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR047115 all species →	Family	Arylsulfatase B	Interproscan
IPR000917 all species →	Domain	Sulfatase, N-terminal	Interproscan
IPR024607 all species →	Conserved_site	Sulfatase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10342 all species →	ARYLSULFATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008484 all species →	Molecular Function	sulfuric ester hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.3287.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.