Genomic Location: Ap1:34100205...34115822
NR annotation: KAJ7334437.1, Anaphase-promoting complex subunit 2 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.3336 |
| Transcript |
| evm.model.Ap1.3336 |
| Protein |
| evm.model.Ap1.3336 |
| UniProt accession | Description |
|---|---|
| Q9UJX6 | Anaphase-promoting complex subunit 2 OS=Homo sapiens OX=9606 GN=ANAPC2 PE=1 SV=1 |
| Q8BZQ7 | Anaphase-promoting complex subunit 2 OS=Mus musculus OX=10090 GN=Anapc2 PE=1 SV=2 |
| Q8H1U5 | Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=APC2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004918 (this species only) |
| Ubiquitin family | E3|E3 adaptor Cullin RING|Cullin · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08672 all species → | ANAPC2 | Anaphase promoting complex (APC) subunit 2 | Domain | Interproscan |
| PF00888 all species → | Cullin | Cullin family | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR044554 all species → | Family | Anaphase-promoting complex subunit 2 | Interproscan |
| IPR016158 all species → | Domain | Cullin homology domain | Interproscan |
| IPR036317 all species → | Homologous_superfamily | Cullin homology domain superfamily | Interproscan |
| IPR014786 all species → | Domain | Anaphase-promoting complex subunit 2, C-terminal | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR001373 all species → | Domain | Cullin, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45957 all species → | ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005680 all species → | Cellular Component | anaphase-promoting complex | Interproscan |
| GO:0007091 all species → | Biological Process | metaphase/anaphase transition of mitotic cell cycle | Interproscan |
| GO:0070979 all species → | Biological Process | protein K11-linked ubiquitination | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0031625 all species → | Molecular Function | ubiquitin protein ligase binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03349 | APC2, ANAPC2; anaphase-promoting complex subunit 2 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of evm.model.Ap1.3336 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
