Detailed information of evm.model.Ap1.3389 in Astrangia poculata

Genomic Location: Ap1:34739970...34766613
NR annotation: XP_020630145.1, protein transport protein Sec16A-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q75NY9Protein transport protein Sec16B OS=Bos taurus OX=9913 GN=SEC16B PE=2 SV=1
O15027Protein transport protein Sec16A OS=Homo sapiens OX=9606 GN=SEC16A PE=1 SV=4
E9QAT4Protein transport protein Sec16A OS=Mus musculus OX=10090 GN=Sec16a PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002424 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12931
all species →
Sec16_CSec23-binding domain of Sec16DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024880
all species →
FamilyCOPII coat assembly protein, Sec16Interproscan
IPR024298
all species →
DomainAncestral coatomer element 1, Sec16/Sec31Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13402
all species →
RGPR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006914
all species →
Biological ProcessautophagyInterproscan
GO:0007030
all species →
Biological ProcessGolgi organizationInterproscan
GO:0012507
all species →
Cellular ComponentER to Golgi transport vesicle membraneInterproscan
GO:0048208
all species →
Biological ProcessCOPII vesicle coatingInterproscan
GO:0070971
all species →
Cellular Componentendoplasmic reticulum exit siteInterproscan
GO:0070973
all species →
Biological Processprotein localization to endoplasmic reticulum exit siteInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20353SEC16; COPII coat assembly protein SEC16-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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