Gene detail

Detailed information of evm.model.Ap1.3404 in Astrangia poculata

Genomic Location: Ap1:34889193...34904705
NR annotation: XP_020630217.1, uncharacterized protein LOC110067252 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.3404

atgttgttgttgacgaatgcttttgccttcttttcacttcaactatgcctcgtattgggaaaagacctcctgcttcccaaatgtgtcaagattgtgtccattaacacccctctggacgacccgaccagggccgcagagaactacggtgtacgagccgacagaaagaaagcagtactgactgataagccggaggtctttaggatccataaaggacttatggaagagaatggaactgtgtctctggaagcactttttcatcctcgattttttttgcgccacaaaaattaccactttcatttggagaaagaggtcaacaactccatgttttacaaggatgccacattcttcattttgaaagtcacagaagacccagccctgtacgcttttgagctgtacagtcatcccacgtggttcatgcgtcatttgagccacaagccttacaaaatggttctcaggaaaactcaagaaaacaatagtattctgcggcgtctctctcctcctgttttcttcttggaaaacaatgctgaaaaaaagacagttatggtgggagaaggaacgtttatagacactgcagacgaagaagctgacattgccaatgctaaagccaacgatttgcatgttgaggattttgaaaaagattttgcatctagaaacctagatgaaaaaggggaatcgattcgtatacacactgaagatgatccaaaggacgatagaaagcctattaaaatacacacagaggcttccacaggagaaagtcaagcagatatcttgaaggaggtcgaagacgctttcagaattgcccagaatacagacaattctacatatctggagaagatcgaaaaagacattgaggacaaagtaaacactatagctgaggcagctgcgaatgaacctaagaaaccgccttctgccgctgcaaagagccatgacaacaaaataaacacagtggatgatatcgagattcacacagaggcggacgaaccagacaagcctaaaagcaatttgaagacgaaaatacacactgaaagcgatatacaagatgtgggtaatgaagaggatcccacaaacaaaccttcgaaggtcagacacgaggaacgaacacagagagtggaagttttagggccggtgatcgagataaagaagccttcggatgaggctgaacaaaccgagattaataaagaaattgtggtaacaggaaaacctaagttgaatgggaaagttacgattgacacaacatttcaatacaagcatccacataagacgaagatcaagaagaacggcgagcatagagagaagcttaatgggtttagcatcgacaacgttgtccctgcgaaaagccccacaaatacagcatccgatgacatgcgattgaaaacgaagacgcatgcgcggcagcacaaagcgtatcatgattattcagtggcacacaaagttttgaattccaatatcgagaaactaagaaacgtcctgaacgcaatcgaaggtgcgccggccaacaacaaagctagtgaacaaggatttgaggtggtgaagaaaaaatctggcaggttaggtgcgttatccggtcaaaaacagcatgtgaacgaaattgaggcaagcctgcagcttagcggcacacctcaagttatccctccttacctgccccaggctctggcgggatacaaagtgctcaagactcaatcgagaacacagacgaatatcacaaagcttcctggccctccagtcacgcaacaacctgcaaataacatagtgtcagtcacaaagctaactggtcctccagtcacgcaacaacccgctgataacatagtgtctgcaaatacttctccagtccagaactcggccgtgacagctaatcctttacagaatgcgagcgaaaaacaagtccagttgcctcaaaccagtgggactcccgtgcgggaaaatgctggcttaccacaagcaagtgcgccagggctacacgtggtccaaggaaatggaaatgtaccgaataataacgttaaaaccgagacttctgccgatgtgttagatcacctcgctagtgaccttgttgatcacgatgcagccagccgccccgctaacaacgtagttggtaacagtgtcagtaattgggtgaatcagccccacccccgtaatgataccctccaggagacttttaaggagttgagccctgatgattctgcaaagatattttaccttggtgagtgcgaagacaagtttcccaaggcgtgcgaggactgggcagcccagcggtattgtttgacatttagtgagctaatgaagagatattgtagaaaggcttgcaaactatgcaatcacgtgttagcaacgggttttacctcgtgcgataaatcgtgtggaggaggagtcagactgcgcatgatcaaagtcaataaccgccaagttttgcagcgaagatcttgcaacgtgcaaagctgtccaattaatggaggttacacaccttactcgaattggtccgaatgtagcgtgacatgtggcgaaggagtgcgttaccgacacaggtcatgcagcaaccccaagccacagtttggtgggcatgactgcactcgctatggagctccggttgatactatgccatgcgtcaagggctgtaaaggtttcaaacctgggaaacaccactcatctgccaatgtaggatacaagaatggaaaacattactcagactccaacttaaatcccgaggaatttcctgagtacaaagccgaagagtcaaatccaaagaacccggagcccgttggtgaaagtgattctgatatggaaaaccaagaagatgaagaatcaggcagtacaaatcagccgtctggttatggtcaggagtttgagtggcccaagaaacaccaacggcgtaagccacttgttctgaatcacgtgcacaaaaacgtgtacaaacacaaggacaaccatggcaacgagcattaccttcacattgatgaagagcagaaccctgaagaccaattacaaactcatgtggtgcgataccaagggcaccaagtggcaaggatgcagtgcggtccttcgcgactgcttcagtaccaaaagaacccagcgaacaatcccactgcattcaaacgatcaaacccgtacaagatgtatgatgctggagagattgtgtatgataaagatggcgtacccgcagataccaccaagaatgtcgtacaagcttttgactcgccttacaagatcattcttcaaagaaataaaaataacgaaatgaaagtacttgaacagtgcatagagtcggatgcttccgtaaaccctgaaaacgatttaaagtatggctcccaaaattttgtggattcgacttctttgccaagcgaacagcgatcgcttcccgctacaacaagaccccctgtagatggggagacatccaaccgcttcactgataatggtttatacgagtacaaatatcaagatattggccaaggcgttgacgaaaaagcactagacagtgacgtcacagctcagctgtccagagtaatcaacaacgaagctgcagaaataagtcagaaatctttaaggagtcaagatgccaagcccactcttaaagaagaactagcagctgagaaagaagaagcttggagagagaaaaaatacgaagattatgttgctagaaggtccaagatgtctgcaggacgttag

Transcript

evm.model.Ap1.3404

ATGTTGTTGTTGACGAATGCTTTTGCCTTCTTTTCACTTCAACTATGCCTCGTATTGGGAAAAGACCTCCTGCTTCCCAAATGTGTCAAGATTGTGTCCATTAACACCCCTCTGGACGACCCGACCAGGGCCGCAGAGAACTACGGTGTACGAGCCGACAGAAAGAAAGCAGTACTGACTGATAAGCCGGAGGTCTTTAGGATCCATAAAGGACTTATGGAAGAGAATGGAACTGTGTCTCTGGAAGCACTTTTTCATCCTCGATTTTTTTTGCGCCACAAAAATTACCACTTTCATTTGGAGAAAGAGGTCAACAACTCCATGTTTTACAAGGATGCCACATTCTTCATTTTGAAAGTCACAGAAGACCCAGCCCTGTACGCTTTTGAGCTGTACAGTCATCCCACGTGGTTCATGCGTCATTTGAGCCACAAGCCTTACAAAATGGTTCTCAGGAAAACTCAAGAAAACAATAGTATTCTGCGGCGTCTCTCTCCTCCTGTTTTCTTCTTGGAAAACAATGCTGAAAAAAAGACAGTTATGGTGGGAGAAGGAACGTTTATAGACACTGCAGACGAAGAAGCTGACATTGCCAATGCTAAAGCCAACGATTTGCATGTTGAGGATTTTGAAAAAGATTTTGCATCTAGAAACCTAGATGAAAAAGGGGAATCGATTCGTATACACACTGAAGATGATCCAAAGGACGATAGAAAGCCTATTAAAATACACACAGAGGCTTCCACAGGAGAAAGTCAAGCAGATATCTTGAAGGAGGTCGAAGACGCTTTCAGAATTGCCCAGAATACAGACAATTCTACATATCTGGAGAAGATCGAAAAAGACATTGAGGACAAAGTAAACACTATAGCTGAGGCAGCTGCGAATGAACCTAAGAAACCGCCTTCTGCCGCTGCAAAGAGCCATGACAACAAAATAAACACAGTGGATGATATCGAGATTCACACAGAGGCGGACGAACCAGACAAGCCTAAAAGCAATTTGAAGACGAAAATACACACTGAAAGCGATATACAAGATGTGGGTAATGAAGAGGATCCCACAAACAAACCTTCGAAGGTCAGACACGAGGAACGAACACAGAGAGTGGAAGTTTTAGGGCCGGTGATCGAGATAAAGAAGCCTTCGGATGAGGCTGAACAAACCGAGATTAATAAAGAAATTGTGGTAACAGGAAAACCTAAGTTGAATGGGAAAGTTACGATTGACACAACATTTCAATACAAGCATCCACATAAGACGAAGATCAAGAAGAACGGCGAGCATAGAGAGAAGCTTAATGGGTTTAGCATCGACAACGTTGTCCCTGCGAAAAGCCCCACAAATACAGCATCCGATGACATGCGATTGAAAACGAAGACGCATGCGCGGCAGCACAAAGCGTATCATGATTATTCAGTGGCACACAAAGTTTTGAATTCCAATATCGAGAAACTAAGAAACGTCCTGAACGCAATCGAAGGTGCGCCGGCCAACAACAAAGCTAGTGAACAAGGATTTGAGGTGGTGAAGAAAAAATCTGGCAGGTTAGGTGCGTTATCCGGTCAAAAACAGCATGTGAACGAAATTGAGGCAAGCCTGCAGCTTAGCGGCACACCTCAAGTTATCCCTCCTTACCTGCCCCAGGCTCTGGCGGGATACAAAGTGCTCAAGACTCAATCGAGAACACAGACGAATATCACAAAGCTTCCTGGCCCTCCAGTCACGCAACAACCTGCAAATAACATAGTGTCAGTCACAAAGCTAACTGGTCCTCCAGTCACGCAACAACCCGCTGATAACATAGTGTCTGCAAATACTTCTCCAGTCCAGAACTCGGCCGTGACAGCTAATCCTTTACAGAATGCGAGCGAAAAACAAGTCCAGTTGCCTCAAACCAGTGGGACTCCCGTGCGGGAAAATGCTGGCTTACCACAAGCAAGTGCGCCAGGGCTACACGTGGTCCAAGGAAATGGAAATGTACCGAATAATAACGTTAAAACCGAGACTTCTGCCGATGTGTTAGATCACCTCGCTAGTGACCTTGTTGATCACGATGCAGCCAGCCGCCCCGCTAACAACGTAGTTGGTAACAGTGTCAGTAATTGGGTGAATCAGCCCCACCCCCGTAATGATACCCTCCAGGAGACTTTTAAGGAGTTGAGCCCTGATGATTCTGCAAAGATATTTTACCTTGGTGAGTGCGAAGACAAGTTTCCCAAGGCGTGCGAGGACTGGGCAGCCCAGCGGTATTGTTTGACATTTAGTGAGCTAATGAAGAGATATTGTAGAAAGGCTTGCAAACTATGCAATCACGTGTTAGCAACGGGTTTTACCTCGTGCGATAAATCGTGTGGAGGAGGAGTCAGACTGCGCATGATCAAAGTCAATAACCGCCAAGTTTTGCAGCGAAGATCTTGCAACGTGCAAAGCTGTCCAATTAATGGAGGTTACACACCTTACTCGAATTGGTCCGAATGTAGCGTGACATGTGGCGAAGGAGTGCGTTACCGACACAGGTCATGCAGCAACCCCAAGCCACAGTTTGGTGGGCATGACTGCACTCGCTATGGAGCTCCGGTTGATACTATGCCATGCGTCAAGGGCTGTAAAGGTTTCAAACCTGGGAAACACCACTCATCTGCCAATGTAGGATACAAGAATGGAAAACATTACTCAGACTCCAACTTAAATCCCGAGGAATTTCCTGAGTACAAAGCCGAAGAGTCAAATCCAAAGAACCCGGAGCCCGTTGGTGAAAGTGATTCTGATATGGAAAACCAAGAAGATGAAGAATCAGGCAGTACAAATCAGCCGTCTGGTTATGGTCAGGAGTTTGAGTGGCCCAAGAAACACCAACGGCGTAAGCCACTTGTTCTGAATCACGTGCACAAAAACGTGTACAAACACAAGGACAACCATGGCAACGAGCATTACCTTCACATTGATGAAGAGCAGAACCCTGAAGACCAATTACAAACTCATGTGGTGCGATACCAAGGGCACCAAGTGGCAAGGATGCAGTGCGGTCCTTCGCGACTGCTTCAGTACCAAAAGAACCCAGCGAACAATCCCACTGCATTCAAACGATCAAACCCGTACAAGATGTATGATGCTGGAGAGATTGTGTATGATAAAGATGGCGTACCCGCAGATACCACCAAGAATGTCGTACAAGCTTTTGACTCGCCTTACAAGATCATTCTTCAAAGAAATAAAAATAACGAAATGAAAGTACTTGAACAGTGCATAGAGTCGGATGCTTCCGTAAACCCTGAAAACGATTTAAAGTATGGCTCCCAAAATTTTGTGGATTCGACTTCTTTGCCAAGCGAACAGCGATCGCTTCCCGCTACAACAAGACCCCCTGTAGATGGGGAGACATCCAACCGCTTCACTGATAATGGTTTATACGAGTACAAATATCAAGATATTGGCCAAGGCGTTGACGAAAAAGCACTAGACAGTGACGTCACAGCTCAGCTGTCCAGAGTAATCAACAACGAAGCTGCAGAAATAAGTCAGAAATCTTTAAGGAGTCAAGATGCCAAGCCCACTCTTAAAGAAGAACTAGCAGCTGAGAAAGAAGAAGCTTGGAGAGAGAAAAAATACGAAGATTATGTTGCTAGAAGGTCCAAGATGTCTGCAGGACGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28178	Thrombospondin-1 OS=Bos taurus OX=9913 GN=THBS1 PE=2 SV=2
P07996	Thrombospondin-1 OS=Homo sapiens OX=9606 GN=THBS1 PE=1 SV=2
P35441	Thrombospondin-1 OS=Mus musculus OX=10090 GN=Thbs1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004788 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF05270 all species →	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR007934 all species →	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan
IPR052065 all species →	Family	Complement and asymmetry regulator	Interproscan
IPR036195 all species →	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22906 all species →	PROPERDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046373 all species →	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556 all species →	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.3404.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.